Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 AC091799.1-201ENST00000422823 811 ntBASIC20.61■□□□□ 0.89
LRRC39Q96DD0 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 PCDHAC2-203ENST00000615316 3011 ntBASIC20.61■□□□□ 0.89
LRRC39Q96DD0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 RBM17P2-201ENST00000616397 1405 ntBASIC20.61■□□□□ 0.89
LRRC39Q96DD0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.61■□□□□ 0.89
LRRC39Q96DD0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 YBX1P1-201ENST00000445822 960 ntBASIC20.6■□□□□ 0.89
LRRC39Q96DD0 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRRC39Q96DD0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.59■□□□□ 0.89
LRRC39Q96DD0 AC007322.3-201ENST00000426526 701 ntBASIC20.59■□□□□ 0.89
LRRC39Q96DD0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 KRT8P36-201ENST00000489121 1440 ntBASIC20.59■□□□□ 0.89
LRRC39Q96DD0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRRC39Q96DD0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.58■□□□□ 0.89
LRRC39Q96DD0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.58■□□□□ 0.89
LRRC39Q96DD0 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRRC39Q96DD0 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LRRC39Q96DD0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.58■□□□□ 0.88
LRRC39Q96DD0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRRC39Q96DD0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.56■□□□□ 0.88
LRRC39Q96DD0 FAM21FP-204ENST00000608637 956 ntBASIC20.56■□□□□ 0.88
LRRC39Q96DD0 SMG8-203ENST00000578922 2178 ntBASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms