Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
CCDC89Q8N998 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC89Q8N998 AC092720.2-201ENST00000602388 1665 ntBASIC21.14■□□□□ 0.97
CCDC89Q8N998 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC89Q8N998 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC89Q8N998 AC112907.3-201ENST00000577781 2400 ntBASIC21.14■□□□□ 0.97
CCDC89Q8N998 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CCDC89Q8N998 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CCDC89Q8N998 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC89Q8N998 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC89Q8N998 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L2-201ENST00000561772 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L6-201ENST00000626483 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L1-201ENST00000627662 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L8-201ENST00000629013 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L3-201ENST00000630187 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L7-201ENST00000630678 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 DUX4L5-201ENST00000630834 1275 ntBASIC21.12■□□□□ 0.97
CCDC89Q8N998 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC89Q8N998 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CCDC89Q8N998 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC89Q8N998 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CCDC89Q8N998 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC89Q8N998 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC89Q8N998 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC89Q8N998 AC104187.1-201ENST00000607510 612 ntBASIC21.11■□□□□ 0.97
CCDC89Q8N998 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC89Q8N998 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC89Q8N998 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CCDC89Q8N998 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC89Q8N998 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC89Q8N998 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC89Q8N998 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
CCDC89Q8N998 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC89Q8N998 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms