Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC116Q8IYX3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
CCDC116Q8IYX3 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC116Q8IYX3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC116Q8IYX3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 GABARAPL3-202ENST00000624044 1851 ntBASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 CNN2P6-201ENST00000439038 900 ntBASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 AC007322.4-201ENST00000509611 723 ntBASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC116Q8IYX3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 AC016405.3-201ENST00000607710 860 ntBASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 AC092437.1-201ENST00000624794 1048 ntBASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 AC020907.5-201ENST00000624372 1936 ntBASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC116Q8IYX3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 AC068338.2-201ENST00000563278 1430 ntBASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 FAM21FP-204ENST00000608637 956 ntBASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC116Q8IYX3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 AC004911.1-201ENST00000416316 871 ntBASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 AL162412.1-201ENST00000567129 965 ntBASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC116Q8IYX3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms