Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRIM40Q6P9F5 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM40Q6P9F5 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRIM40Q6P9F5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 FAM21FP-204ENST00000608637 956 ntBASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 AC092666.2-201ENST00000613287 246 ntBASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
TRIM40Q6P9F5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 AC073111.5-205ENST00000641717 521 ntBASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRIM40Q6P9F5 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 AC068338.2-201ENST00000563278 1430 ntBASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRIM40Q6P9F5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.54■□□□□ 0.72
TRIM40Q6P9F5 AC069236.1-201ENST00000604339 616 ntBASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms