Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.57■□□□□ 0.56
NIPAL3Q6P499 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 FP700111.2-201ENST00000619190 1892 ntBASIC18.56■□□□□ 0.56
NIPAL3Q6P499 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 UBE2DNL-204ENST00000602536 740 ntBASIC18.56■□□□□ 0.56
NIPAL3Q6P499 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 KRT16P2-201ENST00000414673 1423 ntBASIC18.56■□□□□ 0.56
NIPAL3Q6P499 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NIPAL3Q6P499 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 PCDHAC2-203ENST00000615316 3011 ntBASIC18.55■□□□□ 0.56
NIPAL3Q6P499 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NIPAL3Q6P499 AL162377.1-201ENST00000618844 1793 ntBASIC18.55■□□□□ 0.56
NIPAL3Q6P499 AFG3L1P-217ENST00000557444 2447 ntBASIC18.54■□□□□ 0.56
NIPAL3Q6P499 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.54■□□□□ 0.56
NIPAL3Q6P499 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 AL512408.1-201ENST00000569378 2000 ntBASIC18.54■□□□□ 0.56
NIPAL3Q6P499 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NIPAL3Q6P499 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NIPAL3Q6P499 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 AC022517.1-201ENST00000592429 346 ntBASIC18.52■□□□□ 0.56
NIPAL3Q6P499 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 MYCNOS-205ENST00000641950 531 ntBASIC18.52■□□□□ 0.56
NIPAL3Q6P499 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
NIPAL3Q6P499 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NIPAL3Q6P499 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.55
NIPAL3Q6P499 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.52■□□□□ 0.55
NIPAL3Q6P499 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.55
NIPAL3Q6P499 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
NIPAL3Q6P499 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms