Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
KRT39Q6A163 KRT8P36-201ENST00000489121 1440 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 AC087633.2-202ENST00000565166 1439 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 PGM5P4-201ENST00000421970 445 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 AC026185.1-201ENST00000445748 174 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 AC092666.2-201ENST00000613287 246 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 OR10C1-204ENST00000622521 1039 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC22.06■■□□□ 1.12
KRT39Q6A163 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 AC020907.5-201ENST00000624372 1936 ntBASIC22.06■■□□□ 1.12
KRT39Q6A163 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
KRT39Q6A163 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
KRT39Q6A163 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.05■■□□□ 1.12
KRT39Q6A163 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.05■■□□□ 1.12
KRT39Q6A163 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
KRT39Q6A163 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC22.05■■□□□ 1.12
KRT39Q6A163 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC22.05■■□□□ 1.12
KRT39Q6A163 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.05■■□□□ 1.12
KRT39Q6A163 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
KRT39Q6A163 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
KRT39Q6A163 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
KRT39Q6A163 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 LINC01521-201ENST00000504184 1943 ntBASIC22.04■■□□□ 1.12
KRT39Q6A163 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC22.04■■□□□ 1.12
KRT39Q6A163 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.04■■□□□ 1.12
KRT39Q6A163 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
KRT39Q6A163 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.04■■□□□ 1.12
KRT39Q6A163 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 AC092720.2-201ENST00000602388 1665 ntBASIC22.04■■□□□ 1.12
KRT39Q6A163 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC22.04■■□□□ 1.12
KRT39Q6A163 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
KRT39Q6A163 AC092667.1-201ENST00000434301 2586 ntBASIC22.03■■□□□ 1.12
KRT39Q6A163 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.03■■□□□ 1.12
KRT39Q6A163 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.03■■□□□ 1.12
KRT39Q6A163 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
KRT39Q6A163 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 MCRIP2P1-201ENST00000394346 511 ntBASIC22.03■■□□□ 1.12
KRT39Q6A163 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.03■■□□□ 1.12
KRT39Q6A163 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC22.03■■□□□ 1.12
KRT39Q6A163 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
KRT39Q6A163 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.02■■□□□ 1.12
KRT39Q6A163 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
KRT39Q6A163 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 AL512625.2-201ENST00000417533 625 ntBASIC22.02■■□□□ 1.12
KRT39Q6A163 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
KRT39Q6A163 AL356652.1-201ENST00000615962 565 ntBASIC22.02■■□□□ 1.12
KRT39Q6A163 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC22.02■■□□□ 1.12
KRT39Q6A163 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC22.02■■□□□ 1.12
KRT39Q6A163 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
KRT39Q6A163 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
KRT39Q6A163 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
KRT39Q6A163 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms