Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 IST1-206ENST00000456820 2031 ntTSL 514.67□□□□□ -0.064e-8■■□□□ 13.3
U2AF1Q01081 IST1-213ENST00000538565 1245 ntTSL 214.59□□□□□ -0.074e-8■■□□□ 13.3
U2AF1Q01081 IST1-202ENST00000378798 2255 ntTSL 1 (best) BASIC14.08□□□□□ -0.154e-8■■□□□ 13.3
U2AF1Q01081 IST1-226ENST00000606369 3583 ntTSL 2 BASIC11.19□□□□□ -0.624e-8■■□□□ 13.3
U2AF1Q01081 IST1-208ENST00000535424 4082 ntTSL 5 BASIC9.93□□□□□ -0.824e-8■■□□□ 13.3
U2AF1Q01081 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.07■□□□□ 0.961e-323■■□□□ 13.3
U2AF1Q01081 SEC31A-239ENST00000514362 617 ntTSL 34.98□□□□□ -1.613e-7■■□□□ 13.3
U2AF1Q01081 NUP43-203ENST00000367404 1089 ntTSL 2 BASIC13.08□□□□□ -0.327e-9■■□□□ 13.3
U2AF1Q01081 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.97e-9■■□□□ 13.3
U2AF1Q01081 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.084e-9■■□□□ 13.3
U2AF1Q01081 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.944e-9■■□□□ 13.3
U2AF1Q01081 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.824e-9■■□□□ 13.3
U2AF1Q01081 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.154e-9■■□□□ 13.3
U2AF1Q01081 ASXL1-204ENST00000470145 1073 ntTSL 513.33□□□□□ -0.284e-9■■□□□ 13.3
U2AF1Q01081 CCDC162P-202ENST00000368966 6751 ntBASIC9.74□□□□□ -0.853e-6■■□□□ 13.3
U2AF1Q01081 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.222e-7■■□□□ 13.2
U2AF1Q01081 ORMDL1-206ENST00000458355 914 ntTSL 325.77■■□□□ 1.722e-7■■□□□ 13.2
U2AF1Q01081 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.152e-7■■□□□ 13.2
U2AF1Q01081 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.55■□□□□ 0.42e-7■■□□□ 13.2
U2AF1Q01081 PIAS2-202ENST00000398654 2043 ntTSL 1 (best)32.6■■■□□ 2.812e-6■■□□□ 13.2
U2AF1Q01081 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC28.01■■■□□ 2.072e-6■■□□□ 13.2
U2AF1Q01081 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC17.02■□□□□ 0.312e-6■■□□□ 13.2
U2AF1Q01081 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.322e-6■■□□□ 13.2
U2AF1Q01081 PIAS2-215ENST00000592212 2790 ntTSL 53.7□□□□□ -1.822e-6■■□□□ 13.2
U2AF1Q01081 KPNB1-212ENST00000582126 653 ntTSL 518.95■□□□□ 0.624e-10■■□□□ 13.2
U2AF1Q01081 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)15.58■□□□□ 0.094e-30■■□□□ 13.2
U2AF1Q01081 HSPA8-209ENST00000526862 504 ntTSL 36.13□□□□□ -1.434e-30■■□□□ 13.2
U2AF1Q01081 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.613e-6■■□□□ 13.2
U2AF1Q01081 EHBP1-201ENST00000263991 5165 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.383e-6■■□□□ 13.2
U2AF1Q01081 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC8.79□□□□□ -13e-6■■□□□ 13.2
U2AF1Q01081 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.443e-6■■□□□ 13.2
U2AF1Q01081 EPB41L2-230ENST00000533912 514 ntTSL 511.5□□□□□ -0.573e-6■■□□□ 13.2
U2AF1Q01081 EPB41L2-231ENST00000534166 572 ntTSL 38.38□□□□□ -1.073e-6■■□□□ 13.2
U2AF1Q01081 USP34-204ENST00000453133 1409 ntTSL 56.61□□□□□ -1.355e-6■■□□□ 13.2
U2AF1Q01081 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.39■■□□□ 1.013e-6■■□□□ 13.2
U2AF1Q01081 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC18.77■□□□□ 0.63e-6■■□□□ 13.2
U2AF1Q01081 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.163e-6■■□□□ 13.2
U2AF1Q01081 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC7.18□□□□□ -1.263e-6■■□□□ 13.2
U2AF1Q01081 RALGAPA1-209ENST00000554652 4487 ntTSL 26.77□□□□□ -1.333e-6■■□□□ 13.2
U2AF1Q01081 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.84□□□□□ -1.483e-6■■□□□ 13.2
U2AF1Q01081 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.635e-9■■□□□ 13.2
U2AF1Q01081 SRSF2-204ENST00000452355 1357 ntTSL 521.35■■□□□ 1.015e-9■■□□□ 13.2
U2AF1Q01081 SRSF2-208ENST00000585202 1359 ntTSL 319.74■□□□□ 0.755e-9■■□□□ 13.2
U2AF1Q01081 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.485e-9■■□□□ 13.2
U2AF1Q01081 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC21.96■■□□□ 1.113e-7■■□□□ 13.2
U2AF1Q01081 LEPROT-202ENST00000475108 492 ntTSL 329.02■■■□□ 2.244e-8■■□□□ 13.1
U2AF1Q01081 LEPROT-201ENST00000371065 4622 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.254e-8■■□□□ 13.1
U2AF1Q01081 LEPR-204ENST00000371059 3079 ntTSL 1 (best) BASIC15.45■□□□□ 0.064e-8■■□□□ 13.1
U2AF1Q01081 LEPROT-204ENST00000488747 345 ntTSL 514.31□□□□□ -0.124e-8■■□□□ 13.1
U2AF1Q01081 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC8.43□□□□□ -1.064e-8■■□□□ 13.1
U2AF1Q01081 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC7.04□□□□□ -1.284e-8■■□□□ 13.1
U2AF1Q01081 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.794e-8■■□□□ 13.1
U2AF1Q01081 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC19.22■□□□□ 0.673e-7■■□□□ 13.1
U2AF1Q01081 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.533e-7■■□□□ 13.1
U2AF1Q01081 SNRPC-203ENST00000374018 600 ntTSL 5 BASIC14.18□□□□□ -0.143e-7■■□□□ 13.1
U2AF1Q01081 SNRPC-204ENST00000474635 511 ntTSL 511.48□□□□□ -0.573e-7■■□□□ 13.1
U2AF1Q01081 TMEM41B-206ENST00000533867 966 ntTSL 28.07□□□□□ -1.125e-7■■□□□ 13.1
U2AF1Q01081 VAPA-207ENST00000583879 719 ntTSL 27.09□□□□□ -1.271e-9■■□□□ 13.1
U2AF1Q01081 VAPA-206ENST00000583475 939 ntTSL 24.56□□□□□ -1.681e-9■■□□□ 13.1
U2AF1Q01081 GIPR-207ENST00000591322 557 ntTSL 422.11■■□□□ 1.132e-7■■□□□ 13.1
U2AF1Q01081 RCOR3-205ENST00000472734 452 ntTSL 228.41■■■□□ 2.142e-7■■□□□ 13.1
U2AF1Q01081 RCOR3-216ENST00000534478 564 ntTSL 422.48■■□□□ 1.192e-7■■□□□ 13.1
U2AF1Q01081 RCOR3-210ENST00000528408 570 ntTSL 221.64■■□□□ 1.052e-7■■□□□ 13.1
U2AF1Q01081 RCOR3-214ENST00000533469 540 ntTSL 412.53□□□□□ -0.42e-7■■□□□ 13.1
U2AF1Q01081 RCOR3-212ENST00000529572 1022 ntTSL 57.66□□□□□ -1.182e-7■■□□□ 13.1
U2AF1Q01081 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)23.5■■□□□ 1.353e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-201ENST00000323981 2540 ntTSL 217.58■□□□□ 0.43e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-204ENST00000525928 1710 ntTSL 29.37□□□□□ -0.913e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-222ENST00000546088 1728 ntTSL 38.61□□□□□ -1.033e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-210ENST00000529435 1011 ntTSL 57.25□□□□□ -1.253e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-219ENST00000534079 656 ntTSL 26.38□□□□□ -1.393e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-215ENST00000530769 4358 ntTSL 26.18□□□□□ -1.423e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-202ENST00000393259 547 ntTSL 35.41□□□□□ -1.543e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-213ENST00000529900 1066 ntTSL 25.07□□□□□ -1.63e-8■■□□□ 13.1
U2AF1Q01081 TAF1D-221ENST00000540232 483 ntTSL 34.58□□□□□ -1.683e-8■■□□□ 13.1
U2AF1Q01081 FN1-224ENST00000492816 9171 ntTSL 56.67□□□□□ -1.343e-9■■□□□ 13.1
U2AF1Q01081 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.981e-13■■□□□ 13.1
U2AF1Q01081 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.73□□□□□ -1.491e-13■■□□□ 13.1
U2AF1Q01081 FUS-208ENST00000564766 791 ntTSL 24.93□□□□□ -1.622e-7■■□□□ 13.1
U2AF1Q01081 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.453e-7■■□□□ 13.1
U2AF1Q01081 APOL2-209ENST00000529194 611 ntTSL 313.08□□□□□ -0.323e-7■■□□□ 13.1
U2AF1Q01081 APOL2-201ENST00000249066 2685 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.433e-7■■□□□ 13.1
U2AF1Q01081 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.523e-7■■□□□ 13.1
U2AF1Q01081 SLC26A6-215ENST00000466257 706 ntTSL 311.61□□□□□ -0.551e-6■■□□□ 13.1
U2AF1Q01081 APOL2-204ENST00000454728 577 ntTSL 411.43□□□□□ -0.583e-7■■□□□ 13.1
U2AF1Q01081 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.59■■■□□ 2.492e-7■■□□□ 13.1
U2AF1Q01081 ERRFI1-205ENST00000487559 787 ntTSL 230.59■■■□□ 2.492e-7■■□□□ 13.1
U2AF1Q01081 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.52■■■□□ 2.482e-7■■□□□ 13.1
U2AF1Q01081 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.82e-7■■□□□ 13.1
U2AF1Q01081 ALG13-226ENST00000622986 582 ntTSL 2 BASIC11.76□□□□□ -0.533e-6■■□□□ 13.1
U2AF1Q01081 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.72e-6■■□□□ 13.1
U2AF1Q01081 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.192e-8■■□□□ 13.1
U2AF1Q01081 STX5-203ENST00000394690 1568 ntTSL 5 BASIC27.98■■■□□ 2.072e-8■■□□□ 13.1
U2AF1Q01081 STX5-207ENST00000491231 1719 ntTSL 527.87■■■□□ 2.052e-8■■□□□ 13.1
U2AF1Q01081 STX5-208ENST00000492066 1627 ntTSL 526.31■■□□□ 1.82e-8■■□□□ 13.1
U2AF1Q01081 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC24.95■■□□□ 1.582e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-216ENST00000509158 555 ntTSL 227.5■■□□□ 1.991e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.21e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-211ENST00000505958 758 ntTSL 522.32■■□□□ 1.161e-8■■□□□ 13.1
U2AF1Q01081 RBPJ-223ENST00000512671 795 ntTSL 220.49■□□□□ 0.871e-8■■□□□ 13.1
Retrieved 100 of 10,096 protein–RNA pairs in 60.1 ms