Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
FOXA3P55318 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA3P55318 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA3P55318 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA3P55318 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA3P55318 MTDHP2-201ENST00000601468 714 ntBASIC15.29■□□□□ 0.04
FOXA3P55318 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA3P55318 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA3P55318 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA3P55318 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
FOXA3P55318 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
FOXA3P55318 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
FOXA3P55318 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
FOXA3P55318 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
FOXA3P55318 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA3P55318 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA3P55318 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 AC006455.2-201ENST00000429931 906 ntBASIC15.28■□□□□ 0.04
FOXA3P55318 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA3P55318 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
FOXA3P55318 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA3P55318 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
FOXA3P55318 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
FOXA3P55318 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA3P55318 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA3P55318 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
FOXA3P55318 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.27■□□□□ 0.04
FOXA3P55318 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
FOXA3P55318 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
FOXA3P55318 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC15.27■□□□□ 0.04
FOXA3P55318 AL033527.3-201ENST00000566366 1196 ntBASIC15.27■□□□□ 0.04
FOXA3P55318 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
FOXA3P55318 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 TNXA-203ENST00000507684 2038 ntBASIC15.27■□□□□ 0.03
FOXA3P55318 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.27■□□□□ 0.03
FOXA3P55318 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC15.27■□□□□ 0.03
FOXA3P55318 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
FOXA3P55318 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.27■□□□□ 0.03
FOXA3P55318 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA3P55318 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA3P55318 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA3P55318 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA3P55318 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms