Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC34.59■■■■□ 3.13
CUX1P39880 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC34.59■■■■□ 3.13
CUX1P39880 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
CUX1P39880 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC34.59■■■■□ 3.13
CUX1P39880 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
CUX1P39880 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
CUX1P39880 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
CUX1P39880 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC34.58■■■■□ 3.13
CUX1P39880 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC34.58■■■■□ 3.13
CUX1P39880 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC34.58■■■■□ 3.13
CUX1P39880 AF186192.3-201ENST00000583427 947 ntBASIC34.58■■■■□ 3.13
CUX1P39880 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
CUX1P39880 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
CUX1P39880 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC34.58■■■■□ 3.13
CUX1P39880 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC34.58■■■■□ 3.13
CUX1P39880 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC34.57■■■■□ 3.13
CUX1P39880 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.13
CUX1P39880 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC34.57■■■■□ 3.13
CUX1P39880 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC34.57■■■■□ 3.13
CUX1P39880 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC34.57■■■■□ 3.12
CUX1P39880 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
CUX1P39880 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC34.57■■■■□ 3.12
CUX1P39880 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
CUX1P39880 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
CUX1P39880 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
CUX1P39880 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC34.57■■■■□ 3.12
CUX1P39880 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC34.57■■■■□ 3.12
CUX1P39880 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX1P39880 SAPCD2P4-201ENST00000424595 1171 ntBASIC34.56■■■■□ 3.12
CUX1P39880 TMPOP1-202ENST00000424642 1267 ntBASIC34.56■■■■□ 3.12
CUX1P39880 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC34.56■■■■□ 3.12
CUX1P39880 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC34.56■■■■□ 3.12
CUX1P39880 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX1P39880 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC34.56■■■■□ 3.12
CUX1P39880 KRT18P35-201ENST00000510488 1269 ntBASIC34.55■■■■□ 3.12
CUX1P39880 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC34.55■■■■□ 3.12
CUX1P39880 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC34.55■■■■□ 3.12
CUX1P39880 KRT8P9-201ENST00000558927 1449 ntBASIC34.55■■■■□ 3.12
CUX1P39880 MFF-203ENST00000349901 1716 ntTSL 2 BASIC34.55■■■■□ 3.12
CUX1P39880 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC34.55■■■■□ 3.12
CUX1P39880 AC124283.5-201ENST00000624661 1809 ntBASIC34.54■■■■□ 3.12
CUX1P39880 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
CUX1P39880 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC34.54■■■■□ 3.12
CUX1P39880 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
CUX1P39880 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC34.54■■■■□ 3.12
CUX1P39880 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
CUX1P39880 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC34.54■■■■□ 3.12
CUX1P39880 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX1P39880 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC34.53■■■■□ 3.12
CUX1P39880 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX1P39880 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
CUX1P39880 AL390719.1-204ENST00000412397 1219 ntBASIC34.53■■■■□ 3.12
CUX1P39880 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC34.53■■■■□ 3.12
CUX1P39880 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC34.53■■■■□ 3.12
CUX1P39880 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX1P39880 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC34.53■■■■□ 3.12
CUX1P39880 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC34.53■■■■□ 3.12
CUX1P39880 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC34.53■■■■□ 3.12
CUX1P39880 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC34.53■■■■□ 3.12
CUX1P39880 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CUX1P39880 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC34.52■■■■□ 3.12
CUX1P39880 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX1P39880 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC34.52■■■■□ 3.12
CUX1P39880 C9orf163-202ENST00000624034 2573 ntBASIC34.52■■■■□ 3.12
CUX1P39880 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX1P39880 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC34.52■■■■□ 3.12
CUX1P39880 RPS15-203ENST00000586096 570 ntTSL 2 BASIC34.52■■■■□ 3.12
CUX1P39880 AL121829.2-201ENST00000620908 328 ntBASIC34.52■■■■□ 3.12
CUX1P39880 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CUX1P39880 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
CUX1P39880 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
CUX1P39880 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
CUX1P39880 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC34.51■■■■□ 3.12
CUX1P39880 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
CUX1P39880 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
CUX1P39880 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC34.51■■■■□ 3.12
CUX1P39880 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC34.51■■■■□ 3.12
CUX1P39880 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC34.51■■■■□ 3.12
CUX1P39880 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
CUX1P39880 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
CUX1P39880 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CUX1P39880 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC34.5■■■■□ 3.11
CUX1P39880 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC34.5■■■■□ 3.11
CUX1P39880 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC34.5■■■■□ 3.11
CUX1P39880 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CUX1P39880 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
CUX1P39880 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC34.5■■■■□ 3.11
CUX1P39880 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
CUX1P39880 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC34.5■■■■□ 3.11
CUX1P39880 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC34.5■■■■□ 3.11
CUX1P39880 MIR6786-201ENST00000616843 113 ntBASIC34.5■■■■□ 3.11
CUX1P39880 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC34.49■■■■□ 3.11
CUX1P39880 ME2-206ENST00000638410 2289 ntTSL 5 BASIC34.49■■■■□ 3.11
CUX1P39880 ME2-210ENST00000639255 2262 ntTSL 5 BASIC34.49■■■■□ 3.11
CUX1P39880 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC34.49■■■■□ 3.11
CUX1P39880 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC34.49■■■■□ 3.11
CUX1P39880 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC34.49■■■■□ 3.11
CUX1P39880 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC34.49■■■■□ 3.11
CUX1P39880 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
CUX1P39880 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms