Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.46■□□□□ 0.71
MSX2P35548 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
MSX2P35548 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.46■□□□□ 0.71
MSX2P35548 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSX2P35548 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 AC055733.4-201ENST00000638462 1354 ntBASIC19.45■□□□□ 0.7
MSX2P35548 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
MSX2P35548 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
MSX2P35548 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.45■□□□□ 0.7
MSX2P35548 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.45■□□□□ 0.7
MSX2P35548 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.45■□□□□ 0.7
MSX2P35548 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSX2P35548 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
MSX2P35548 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.44■□□□□ 0.7
MSX2P35548 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.44■□□□□ 0.7
MSX2P35548 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
MSX2P35548 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.44■□□□□ 0.7
MSX2P35548 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
MSX2P35548 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.44■□□□□ 0.7
MSX2P35548 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.44■□□□□ 0.7
MSX2P35548 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSX2P35548 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
MSX2P35548 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 BX323043.1-201ENST00000641006 1765 ntBASIC19.43■□□□□ 0.7
MSX2P35548 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.43■□□□□ 0.7
MSX2P35548 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.43■□□□□ 0.7
MSX2P35548 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
MSX2P35548 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.43■□□□□ 0.7
MSX2P35548 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
MSX2P35548 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSX2P35548 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
MSX2P35548 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
MSX2P35548 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.42■□□□□ 0.7
MSX2P35548 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
MSX2P35548 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX2P35548 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.42■□□□□ 0.7
MSX2P35548 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX2P35548 AL138724.1-201ENST00000606771 1088 ntBASIC19.42■□□□□ 0.7
MSX2P35548 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX2P35548 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
MSX2P35548 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.42■□□□□ 0.7
MSX2P35548 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.42■□□□□ 0.7
MSX2P35548 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX2P35548 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.41■□□□□ 0.7
MSX2P35548 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.41■□□□□ 0.7
MSX2P35548 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
MSX2P35548 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.41■□□□□ 0.7
MSX2P35548 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSX2P35548 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.41■□□□□ 0.7
MSX2P35548 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms