Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CD74P04233 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CD74P04233 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CD74P04233 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CD74P04233 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.15■□□□□ 0.34
CD74P04233 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CD74P04233 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.14■□□□□ 0.34
CD74P04233 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CD74P04233 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.14■□□□□ 0.33
CD74P04233 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
CD74P04233 AC005224.4-201ENST00000583262 1652 ntBASIC17.14■□□□□ 0.33
CD74P04233 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CD74P04233 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.14■□□□□ 0.33
CD74P04233 AL512631.2-201ENST00000604634 923 ntBASIC17.14■□□□□ 0.33
CD74P04233 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.14■□□□□ 0.33
CD74P04233 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.14■□□□□ 0.33
CD74P04233 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.14■□□□□ 0.33
CD74P04233 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CD74P04233 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CD74P04233 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.13■□□□□ 0.33
CD74P04233 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.13■□□□□ 0.33
CD74P04233 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.13■□□□□ 0.33
CD74P04233 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.13■□□□□ 0.33
CD74P04233 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.13■□□□□ 0.33
CD74P04233 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CD74P04233 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.13■□□□□ 0.33
CD74P04233 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CD74P04233 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.13■□□□□ 0.33
CD74P04233 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.12■□□□□ 0.33
CD74P04233 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CD74P04233 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CD74P04233 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CD74P04233 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CD74P04233 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CD74P04233 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CD74P04233 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CD74P04233 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CD74P04233 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.12■□□□□ 0.33
CD74P04233 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.12■□□□□ 0.33
CD74P04233 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
CD74P04233 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.12■□□□□ 0.33
CD74P04233 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CD74P04233 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.11■□□□□ 0.33
CD74P04233 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CD74P04233 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CD74P04233 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CD74P04233 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms