Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SIX3O95343 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
SIX3O95343 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SIX3O95343 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SIX3O95343 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.95■□□□□ 0.78
SIX3O95343 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.95■□□□□ 0.78
SIX3O95343 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
SIX3O95343 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.94■□□□□ 0.78
SIX3O95343 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.94■□□□□ 0.78
SIX3O95343 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.94■□□□□ 0.78
SIX3O95343 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
SIX3O95343 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.94■□□□□ 0.78
SIX3O95343 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.94■□□□□ 0.78
SIX3O95343 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.94■□□□□ 0.78
SIX3O95343 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SIX3O95343 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SIX3O95343 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SIX3O95343 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SIX3O95343 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SIX3O95343 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SIX3O95343 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.93■□□□□ 0.78
SIX3O95343 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SIX3O95343 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.93■□□□□ 0.78
SIX3O95343 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.93■□□□□ 0.78
SIX3O95343 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.93■□□□□ 0.78
SIX3O95343 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SIX3O95343 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.93■□□□□ 0.78
SIX3O95343 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.93■□□□□ 0.78
SIX3O95343 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.93■□□□□ 0.78
SIX3O95343 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.93■□□□□ 0.78
SIX3O95343 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SIX3O95343 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.93■□□□□ 0.78
SIX3O95343 SMG8-203ENST00000578922 2178 ntBASIC19.93■□□□□ 0.78
SIX3O95343 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.92■□□□□ 0.78
SIX3O95343 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.92■□□□□ 0.78
SIX3O95343 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 AC243732.1-201ENST00000612648 864 ntBASIC19.92■□□□□ 0.78
SIX3O95343 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.92■□□□□ 0.78
SIX3O95343 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.92■□□□□ 0.78
SIX3O95343 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.92■□□□□ 0.78
SIX3O95343 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SIX3O95343 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SIX3O95343 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX3O95343 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SIX3O95343 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX3O95343 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SIX3O95343 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX3O95343 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX3O95343 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SIX3O95343 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX3O95343 SLC7A5P1-201ENST00000568957 537 ntBASIC19.91■□□□□ 0.78
SIX3O95343 UBE2DNL-204ENST00000602536 740 ntBASIC19.91■□□□□ 0.78
SIX3O95343 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.91■□□□□ 0.78
SIX3O95343 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
SIX3O95343 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.91■□□□□ 0.78
SIX3O95343 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
SIX3O95343 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.91■□□□□ 0.78
SIX3O95343 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX3O95343 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.91■□□□□ 0.78
SIX3O95343 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.9■□□□□ 0.78
SIX3O95343 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX3O95343 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SIX3O95343 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SIX3O95343 KRT19P1-201ENST00000405746 1186 ntBASIC19.9■□□□□ 0.78
SIX3O95343 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.9■□□□□ 0.78
SIX3O95343 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms