Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 ZNRF2P3-201ENST00000424200 374 ntBASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV27A0A087WT01 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAV27A0A087WT01 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
TRAV27A0A087WT01 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 KRT18P20-201ENST00000548986 1279 ntBASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 MIR2861-201ENST00000636310 90 ntBASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAV27A0A087WT01 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
TRAV27A0A087WT01 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
TRAV27A0A087WT01 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.46■□□□□ 0.54
TRAV27A0A087WT01 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAV27A0A087WT01 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms