Protein–RNA interactions for Protein: Q9Y5Y9

SCN10A, Sodium channel protein type 10 subunit alpha, humanhuman

Predictions only

Length 1,956 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN10AQ9Y5Y9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
SCN10AQ9Y5Y9 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.56■■■□□ 2.32
SCN10AQ9Y5Y9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SCN10AQ9Y5Y9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.55■■■□□ 2.32
SCN10AQ9Y5Y9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.55■■■□□ 2.32
SCN10AQ9Y5Y9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
SCN10AQ9Y5Y9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN10AQ9Y5Y9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN10AQ9Y5Y9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN10AQ9Y5Y9 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SCN10AQ9Y5Y9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SCN10AQ9Y5Y9 HSD17B1P1-201ENST00000590052 955 ntBASIC29.53■■■□□ 2.32
SCN10AQ9Y5Y9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.52■■■□□ 2.32
SCN10AQ9Y5Y9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SCN10AQ9Y5Y9 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.5■■■□□ 2.31
SCN10AQ9Y5Y9 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.49■■■□□ 2.31
SCN10AQ9Y5Y9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L13-201ENST00000554103 1267 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L15-201ENST00000611059 1267 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L23-201ENST00000615195 1269 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L24-201ENST00000617576 1269 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L22-201ENST00000618238 1269 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L20-201ENST00000619712 1269 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L21-201ENST00000622058 1269 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L10-201ENST00000622460 1267 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 DUX4L25-201ENST00000624915 1269 ntBASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.46■■■□□ 2.31
SCN10AQ9Y5Y9 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.3
SCN10AQ9Y5Y9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
SCN10AQ9Y5Y9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.43■■■□□ 2.3
SCN10AQ9Y5Y9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SCN10AQ9Y5Y9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.42■■■□□ 2.3
SCN10AQ9Y5Y9 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SCN10AQ9Y5Y9 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SCN10AQ9Y5Y9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.41■■■□□ 2.3
SCN10AQ9Y5Y9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
SCN10AQ9Y5Y9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.4■■■□□ 2.3
SCN10AQ9Y5Y9 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.4■■■□□ 2.3
SCN10AQ9Y5Y9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
SCN10AQ9Y5Y9 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
SCN10AQ9Y5Y9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SCN10AQ9Y5Y9 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SCN10AQ9Y5Y9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
SCN10AQ9Y5Y9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SCN10AQ9Y5Y9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SCN10AQ9Y5Y9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.35■■■□□ 2.29
SCN10AQ9Y5Y9 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
SCN10AQ9Y5Y9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SCN10AQ9Y5Y9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.34■■■□□ 2.29
SCN10AQ9Y5Y9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SCN10AQ9Y5Y9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SCN10AQ9Y5Y9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.33■■■□□ 2.29
SCN10AQ9Y5Y9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SCN10AQ9Y5Y9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
SCN10AQ9Y5Y9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SCN10AQ9Y5Y9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SCN10AQ9Y5Y9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.32■■■□□ 2.28
SCN10AQ9Y5Y9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.32■■■□□ 2.28
SCN10AQ9Y5Y9 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.32■■■□□ 2.28
SCN10AQ9Y5Y9 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SCN10AQ9Y5Y9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.32■■■□□ 2.28
SCN10AQ9Y5Y9 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.31■■■□□ 2.28
SCN10AQ9Y5Y9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SCN10AQ9Y5Y9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SCN10AQ9Y5Y9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.3■■■□□ 2.28
SCN10AQ9Y5Y9 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
SCN10AQ9Y5Y9 LINC00273-201ENST00000539813 1452 ntBASIC29.29■■■□□ 2.28
SCN10AQ9Y5Y9 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.27■■■□□ 2.28
SCN10AQ9Y5Y9 AL161658.1-201ENST00000623641 1967 ntBASIC29.27■■■□□ 2.28
SCN10AQ9Y5Y9 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.26■■■□□ 2.28
SCN10AQ9Y5Y9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.26■■■□□ 2.27
SCN10AQ9Y5Y9 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.26■■■□□ 2.27
SCN10AQ9Y5Y9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SCN10AQ9Y5Y9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
SCN10AQ9Y5Y9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.24■■■□□ 2.27
SCN10AQ9Y5Y9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.24■■■□□ 2.27
SCN10AQ9Y5Y9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SCN10AQ9Y5Y9 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
SCN10AQ9Y5Y9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SCN10AQ9Y5Y9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.21■■■□□ 2.27
SCN10AQ9Y5Y9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.21■■■□□ 2.27
SCN10AQ9Y5Y9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SCN10AQ9Y5Y9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.21■■■□□ 2.27
SCN10AQ9Y5Y9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.21■■■□□ 2.27
SCN10AQ9Y5Y9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.2■■■□□ 2.27
SCN10AQ9Y5Y9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
SCN10AQ9Y5Y9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.19■■■□□ 2.26
SCN10AQ9Y5Y9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.19■■■□□ 2.26
SCN10AQ9Y5Y9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.19■■■□□ 2.26
SCN10AQ9Y5Y9 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
SCN10AQ9Y5Y9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SCN10AQ9Y5Y9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SCN10AQ9Y5Y9 AC010864.1-201ENST00000609407 1511 ntBASIC29.17■■■□□ 2.26
SCN10AQ9Y5Y9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
SCN10AQ9Y5Y9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SCN10AQ9Y5Y9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SCN10AQ9Y5Y9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.15■■■□□ 2.26
SCN10AQ9Y5Y9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.15■■■□□ 2.26
SCN10AQ9Y5Y9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.14■■■□□ 2.26
SCN10AQ9Y5Y9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms