Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC15.19■□□□□ 0.02
UBR4Q5T4S7 HES4-204ENST00000484667 667 ntTSL 3 BASIC15.18■□□□□ 0.02
UBR4Q5T4S7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC15.18■□□□□ 0.02
UBR4Q5T4S7 AC025884.2-201ENST00000553429 711 ntBASIC15.18■□□□□ 0.02
UBR4Q5T4S7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC15.17■□□□□ 0.02
UBR4Q5T4S7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC15.17■□□□□ 0.02
UBR4Q5T4S7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
UBR4Q5T4S7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
UBR4Q5T4S7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC15.16■□□□□ 0.02
UBR4Q5T4S7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
UBR4Q5T4S7 THA1P-201ENST00000590384 1145 ntBASIC15.15■□□□□ 0.02
UBR4Q5T4S7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC15.15■□□□□ 0.02
UBR4Q5T4S7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC15.15■□□□□ 0.02
UBR4Q5T4S7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
UBR4Q5T4S7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC15.15■□□□□ 0.02
UBR4Q5T4S7 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
UBR4Q5T4S7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
UBR4Q5T4S7 AC131212.1-201ENST00000613771 668 ntBASIC15.14■□□□□ 0.01
UBR4Q5T4S7 U85056.1-201ENST00000616429 682 ntBASIC15.14■□□□□ 0.01
UBR4Q5T4S7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC15.13■□□□□ 0.01
UBR4Q5T4S7 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
UBR4Q5T4S7 ATP5G2P3-201ENST00000429083 425 ntBASIC15.13■□□□□ 0.01
UBR4Q5T4S7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC15.13■□□□□ 0.01
UBR4Q5T4S7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
UBR4Q5T4S7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC15.12■□□□□ 0.01
UBR4Q5T4S7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC15.12■□□□□ 0.01
UBR4Q5T4S7 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
UBR4Q5T4S7 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
UBR4Q5T4S7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC15.11■□□□□ 0.01
UBR4Q5T4S7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
UBR4Q5T4S7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC15.1■□□□□ 0.01
UBR4Q5T4S7 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBR4Q5T4S7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
UBR4Q5T4S7 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
UBR4Q5T4S7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBR4Q5T4S7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBR4Q5T4S7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.08■□□□□ 0.01
UBR4Q5T4S7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC15.08■□□□□ 0.01
UBR4Q5T4S7 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
UBR4Q5T4S7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
UBR4Q5T4S7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC15.07■□□□□ 0
UBR4Q5T4S7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC15.07■□□□□ 0
UBR4Q5T4S7 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC15.07■□□□□ 0
UBR4Q5T4S7 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC15.06■□□□□ 0
UBR4Q5T4S7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC15.06■□□□□ 0
UBR4Q5T4S7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC15.06■□□□□ 0
UBR4Q5T4S7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
UBR4Q5T4S7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC15.06■□□□□ 0
UBR4Q5T4S7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
UBR4Q5T4S7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ 0
UBR4Q5T4S7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC15.05■□□□□ -0
UBR4Q5T4S7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
UBR4Q5T4S7 AC108673.1-201ENST00000510422 1159 ntBASIC15.04■□□□□ -0
UBR4Q5T4S7 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC15.04■□□□□ -0
UBR4Q5T4S7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
UBR4Q5T4S7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC15.03■□□□□ -0
UBR4Q5T4S7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC15.03■□□□□ -0
UBR4Q5T4S7 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
UBR4Q5T4S7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
UBR4Q5T4S7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
UBR4Q5T4S7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
UBR4Q5T4S7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC15.01□□□□□ -0.01
UBR4Q5T4S7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
UBR4Q5T4S7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
UBR4Q5T4S7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
UBR4Q5T4S7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC15.01□□□□□ -0.01
UBR4Q5T4S7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
UBR4Q5T4S7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
UBR4Q5T4S7 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC14.99□□□□□ -0.01
UBR4Q5T4S7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
UBR4Q5T4S7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
UBR4Q5T4S7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
UBR4Q5T4S7 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
UBR4Q5T4S7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
UBR4Q5T4S7 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC14.98□□□□□ -0.01
UBR4Q5T4S7 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
UBR4Q5T4S7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC14.98□□□□□ -0.01
UBR4Q5T4S7 KRT18P60-201ENST00000312876 1297 ntBASIC14.97□□□□□ -0.01
UBR4Q5T4S7 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBR4Q5T4S7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
UBR4Q5T4S7 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC14.96□□□□□ -0.01
UBR4Q5T4S7 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
UBR4Q5T4S7 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
UBR4Q5T4S7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
UBR4Q5T4S7 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
UBR4Q5T4S7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC14.95□□□□□ -0.02
UBR4Q5T4S7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
UBR4Q5T4S7 AC022413.1-201ENST00000624602 984 ntBASIC14.94□□□□□ -0.02
UBR4Q5T4S7 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
UBR4Q5T4S7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC14.93□□□□□ -0.02
UBR4Q5T4S7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC14.93□□□□□ -0.02
UBR4Q5T4S7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms