Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DUX4L13-201ENST00000554103 1267 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L15-201ENST00000611059 1267 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L23-201ENST00000615195 1269 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L24-201ENST00000617576 1269 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L22-201ENST00000618238 1269 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L20-201ENST00000619712 1269 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L21-201ENST00000622058 1269 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L10-201ENST00000622460 1267 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 DUX4L25-201ENST00000624915 1269 ntBASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.91■■■□□ 2.86
CCDC88AQ3V6T2 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC88AQ3V6T2 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC32.9■■■□□ 2.86
CCDC88AQ3V6T2 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88AQ3V6T2 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88AQ3V6T2 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC88AQ3V6T2 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88AQ3V6T2 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC32.88■■■□□ 2.85
CCDC88AQ3V6T2 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88AQ3V6T2 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88AQ3V6T2 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.88■■■□□ 2.85
CCDC88AQ3V6T2 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC88AQ3V6T2 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC88AQ3V6T2 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC32.86■■■□□ 2.85
CCDC88AQ3V6T2 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC88AQ3V6T2 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88AQ3V6T2 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88AQ3V6T2 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC88AQ3V6T2 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
CCDC88AQ3V6T2 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.82■■■□□ 2.84
CCDC88AQ3V6T2 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88AQ3V6T2 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88AQ3V6T2 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC88AQ3V6T2 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CCDC88AQ3V6T2 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC88AQ3V6T2 GPX1-201ENST00000419349 1106 ntBASIC32.78■■■□□ 2.84
CCDC88AQ3V6T2 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.77■■■□□ 2.84
CCDC88AQ3V6T2 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.84
CCDC88AQ3V6T2 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC88AQ3V6T2 HES6-205ENST00000409356 528 ntTSL 2 BASIC32.76■■■□□ 2.83
CCDC88AQ3V6T2 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC88AQ3V6T2 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC88AQ3V6T2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32.75■■■□□ 2.83
CCDC88AQ3V6T2 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC32.75■■■□□ 2.83
CCDC88AQ3V6T2 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.75■■■□□ 2.83
CCDC88AQ3V6T2 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC32.74■■■□□ 2.83
CCDC88AQ3V6T2 AC120057.4-201ENST00000624722 1615 ntBASIC32.73■■■□□ 2.83
CCDC88AQ3V6T2 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88AQ3V6T2 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88AQ3V6T2 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC32.71■■■□□ 2.83
CCDC88AQ3V6T2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.7■■■□□ 2.83
CCDC88AQ3V6T2 CHML-204ENST00000638121 920 ntTSL 2 BASIC32.7■■■□□ 2.83
CCDC88AQ3V6T2 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88AQ3V6T2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88AQ3V6T2 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.67■■■□□ 2.82
CCDC88AQ3V6T2 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC32.67■■■□□ 2.82
CCDC88AQ3V6T2 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.66■■■□□ 2.82
CCDC88AQ3V6T2 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC32.65■■■□□ 2.82
CCDC88AQ3V6T2 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC32.65■■■□□ 2.82
CCDC88AQ3V6T2 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.63■■■□□ 2.81
CCDC88AQ3V6T2 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88AQ3V6T2 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88AQ3V6T2 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
CCDC88AQ3V6T2 AC012354.3-201ENST00000623734 483 ntBASIC32.61■■■□□ 2.81
CCDC88AQ3V6T2 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88AQ3V6T2 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC88AQ3V6T2 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC32.61■■■□□ 2.81
CCDC88AQ3V6T2 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
CCDC88AQ3V6T2 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
CCDC88AQ3V6T2 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
CCDC88AQ3V6T2 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC32.59■■■□□ 2.81
CCDC88AQ3V6T2 CHST11-202ENST00000546689 756 ntTSL 2 BASIC32.59■■■□□ 2.81
CCDC88AQ3V6T2 TPT1-202ENST00000379055 948 ntTSL 2 BASIC32.58■■■□□ 2.81
CCDC88AQ3V6T2 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88AQ3V6T2 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC88AQ3V6T2 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.57■■■□□ 2.8
CCDC88AQ3V6T2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CCDC88AQ3V6T2 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC32.56■■■□□ 2.8
CCDC88AQ3V6T2 NTF6A-201ENST00000591175 560 ntBASIC32.56■■■□□ 2.8
CCDC88AQ3V6T2 EI24-212ENST00000615917 1407 ntTSL 2 BASIC32.55■■■□□ 2.8
CCDC88AQ3V6T2 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC88AQ3V6T2 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88AQ3V6T2 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.54■■■□□ 2.8
CCDC88AQ3V6T2 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32.54■■■□□ 2.8
CCDC88AQ3V6T2 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CCDC88AQ3V6T2 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms