Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 DUX4L10-201ENST00000622460 1267 ntBASIC29.75■■■□□ 2.35
NKX3-2P78367 DUX4L25-201ENST00000624915 1269 ntBASIC29.75■■■□□ 2.35
NKX3-2P78367 AC120057.4-201ENST00000624722 1615 ntBASIC29.73■■■□□ 2.35
NKX3-2P78367 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NKX3-2P78367 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
NKX3-2P78367 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
NKX3-2P78367 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
NKX3-2P78367 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
NKX3-2P78367 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
NKX3-2P78367 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.7■■■□□ 2.35
NKX3-2P78367 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.7■■■□□ 2.35
NKX3-2P78367 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.7■■■□□ 2.34
NKX3-2P78367 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.69■■■□□ 2.34
NKX3-2P78367 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC29.69■■■□□ 2.34
NKX3-2P78367 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
NKX3-2P78367 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
NKX3-2P78367 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.66■■■□□ 2.34
NKX3-2P78367 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.66■■■□□ 2.34
NKX3-2P78367 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.66■■■□□ 2.34
NKX3-2P78367 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NKX3-2P78367 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
NKX3-2P78367 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.64■■■□□ 2.34
NKX3-2P78367 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
NKX3-2P78367 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC29.63■■■□□ 2.33
NKX3-2P78367 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.63■■■□□ 2.33
NKX3-2P78367 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.63■■■□□ 2.33
NKX3-2P78367 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
NKX3-2P78367 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
NKX3-2P78367 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.62■■■□□ 2.33
NKX3-2P78367 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
NKX3-2P78367 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.61■■■□□ 2.33
NKX3-2P78367 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.6■■■□□ 2.33
NKX3-2P78367 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.6■■■□□ 2.33
NKX3-2P78367 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
NKX3-2P78367 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.59■■■□□ 2.33
NKX3-2P78367 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
NKX3-2P78367 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
NKX3-2P78367 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.58■■■□□ 2.33
NKX3-2P78367 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
NKX3-2P78367 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.55■■■□□ 2.32
NKX3-2P78367 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
NKX3-2P78367 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
NKX3-2P78367 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.55■■■□□ 2.32
NKX3-2P78367 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.55■■■□□ 2.32
NKX3-2P78367 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
NKX3-2P78367 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.54■■■□□ 2.32
NKX3-2P78367 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
NKX3-2P78367 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
NKX3-2P78367 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.53■■■□□ 2.32
NKX3-2P78367 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.53■■■□□ 2.32
NKX3-2P78367 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
NKX3-2P78367 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
NKX3-2P78367 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.51■■■□□ 2.32
NKX3-2P78367 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
NKX3-2P78367 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
NKX3-2P78367 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
NKX3-2P78367 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.5■■■□□ 2.31
NKX3-2P78367 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.5■■■□□ 2.31
NKX3-2P78367 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.5■■■□□ 2.31
NKX3-2P78367 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.49■■■□□ 2.31
NKX3-2P78367 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
NKX3-2P78367 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.47■■■□□ 2.31
NKX3-2P78367 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.47■■■□□ 2.31
NKX3-2P78367 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
NKX3-2P78367 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
NKX3-2P78367 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.45■■■□□ 2.31
NKX3-2P78367 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.44■■■□□ 2.3
NKX3-2P78367 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
NKX3-2P78367 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.44■■■□□ 2.3
NKX3-2P78367 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
NKX3-2P78367 LINC00273-201ENST00000539813 1452 ntBASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.42■■■□□ 2.3
NKX3-2P78367 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.42■■■□□ 2.3
NKX3-2P78367 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
NKX3-2P78367 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NKX3-2P78367 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC29.41■■■□□ 2.3
NKX3-2P78367 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.41■■■□□ 2.3
NKX3-2P78367 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
NKX3-2P78367 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.41■■■□□ 2.3
NKX3-2P78367 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.41■■■□□ 2.3
NKX3-2P78367 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
NKX3-2P78367 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.4■■■□□ 2.3
NKX3-2P78367 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.4■■■□□ 2.3
NKX3-2P78367 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NKX3-2P78367 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
NKX3-2P78367 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.39■■■□□ 2.3
NKX3-2P78367 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
NKX3-2P78367 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.39■■■□□ 2.29
NKX3-2P78367 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
NKX3-2P78367 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms