Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 AP001160.3-201ENST00000601484 763 ntBASIC16.54■□□□□ 0.24
FOXA2Q9Y261 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA2Q9Y261 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 AC120498.10-201ENST00000621827 505 ntBASIC16.53■□□□□ 0.24
FOXA2Q9Y261 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 AL162377.1-201ENST00000618844 1793 ntBASIC16.53■□□□□ 0.24
FOXA2Q9Y261 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA2Q9Y261 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
FOXA2Q9Y261 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA2Q9Y261 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.23
FOXA2Q9Y261 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.52■□□□□ 0.23
FOXA2Q9Y261 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 KRT18P61-201ENST00000585825 1298 ntBASIC16.51■□□□□ 0.23
FOXA2Q9Y261 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
FOXA2Q9Y261 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 AC137761.2-201ENST00000561729 223 ntBASIC16.5■□□□□ 0.23
FOXA2Q9Y261 AC145350.3-201ENST00000569033 163 ntBASIC16.5■□□□□ 0.23
FOXA2Q9Y261 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA2Q9Y261 AL512408.1-201ENST00000569378 2000 ntBASIC16.5■□□□□ 0.23
FOXA2Q9Y261 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
FOXA2Q9Y261 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms