Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 AC092118.2-201ENST00000613495 667 ntBASIC21.04■□□□□ 0.96
VPS28Q9UK41 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS28Q9UK41 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS28Q9UK41 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
VPS28Q9UK41 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS28Q9UK41 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS28Q9UK41 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS28Q9UK41 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS28Q9UK41 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS28Q9UK41 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS28Q9UK41 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.03■□□□□ 0.96
VPS28Q9UK41 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 CYP2T3P-201ENST00000601990 817 ntBASIC21.03■□□□□ 0.96
VPS28Q9UK41 AF106564.1-201ENST00000607058 2553 ntBASIC21.03■□□□□ 0.96
VPS28Q9UK41 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS28Q9UK41 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS28Q9UK41 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 AC005229.4-201ENST00000610085 2198 ntBASIC21.02■□□□□ 0.96
VPS28Q9UK41 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 LSM12P1-201ENST00000411836 588 ntBASIC21.02■□□□□ 0.96
VPS28Q9UK41 AC073210.2-201ENST00000430369 194 ntBASIC21.02■□□□□ 0.96
VPS28Q9UK41 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS28Q9UK41 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS28Q9UK41 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS28Q9UK41 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
VPS28Q9UK41 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VPS28Q9UK41 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
VPS28Q9UK41 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 CYP21A1P-202ENST00000354927 1481 ntBASIC21.01■□□□□ 0.95
VPS28Q9UK41 AC011484.1-201ENST00000377652 1995 ntBASIC21.01■□□□□ 0.95
VPS28Q9UK41 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.01■□□□□ 0.95
VPS28Q9UK41 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS28Q9UK41 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
VPS28Q9UK41 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC21.01■□□□□ 0.95
VPS28Q9UK41 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS28Q9UK41 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
VPS28Q9UK41 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21■□□□□ 0.95
VPS28Q9UK41 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS28Q9UK41 KRT17P1-201ENST00000399211 1546 ntBASIC21■□□□□ 0.95
VPS28Q9UK41 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21■□□□□ 0.95
VPS28Q9UK41 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21■□□□□ 0.95
VPS28Q9UK41 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS28Q9UK41 SERPINH1P1-201ENST00000419794 1249 ntBASIC21■□□□□ 0.95
VPS28Q9UK41 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21■□□□□ 0.95
VPS28Q9UK41 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21■□□□□ 0.95
VPS28Q9UK41 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21■□□□□ 0.95
VPS28Q9UK41 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
VPS28Q9UK41 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21■□□□□ 0.95
VPS28Q9UK41 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VPS28Q9UK41 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS28Q9UK41 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS28Q9UK41 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms