Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC116050.2-201ENST00000612102 1779 ntBASIC20.21■□□□□ 0.83
MKS1Q9NXB0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 KRT87P-202ENST00000534226 1464 ntBASIC20.21■□□□□ 0.83
MKS1Q9NXB0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 AC018445.3-201ENST00000624177 1945 ntBASIC20.21■□□□□ 0.83
MKS1Q9NXB0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.21■□□□□ 0.83
MKS1Q9NXB0 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
MKS1Q9NXB0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.2■□□□□ 0.82
MKS1Q9NXB0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
MKS1Q9NXB0 RASA4CP-201ENST00000424092 1398 ntBASIC20.2■□□□□ 0.82
MKS1Q9NXB0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 EDA-201ENST00000338901 1233 ntBASIC20.19■□□□□ 0.82
MKS1Q9NXB0 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
MKS1Q9NXB0 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 TMEM179-206ENST00000616017 1645 ntBASIC20.18■□□□□ 0.82
MKS1Q9NXB0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 AL354811.1-201ENST00000610286 706 ntBASIC20.18■□□□□ 0.82
MKS1Q9NXB0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.18■□□□□ 0.82
MKS1Q9NXB0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 MIR939-201ENST00000401314 82 ntBASIC20.17■□□□□ 0.82
MKS1Q9NXB0 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MKS1Q9NXB0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms