Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 AL355001.2-201ENST00000620617 1191 ntBASIC18.62■□□□□ 0.57
DDX28Q9NUL7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.62■□□□□ 0.57
DDX28Q9NUL7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 MIR939-201ENST00000401314 82 ntBASIC18.61■□□□□ 0.57
DDX28Q9NUL7 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.61■□□□□ 0.57
DDX28Q9NUL7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 RARRES2P6-201ENST00000567333 442 ntBASIC18.61■□□□□ 0.57
DDX28Q9NUL7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
DDX28Q9NUL7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 AC020763.4-201ENST00000623414 4170 ntBASIC18.6■□□□□ 0.57
DDX28Q9NUL7 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 RASA4CP-201ENST00000424092 1398 ntBASIC18.6■□□□□ 0.57
DDX28Q9NUL7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 AC091305.1-201ENST00000479476 895 ntBASIC18.6■□□□□ 0.57
DDX28Q9NUL7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 AFG3L1P-217ENST00000557444 2447 ntBASIC18.6■□□□□ 0.57
DDX28Q9NUL7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DDX28Q9NUL7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 TSPY26P-201ENST00000476365 1326 ntBASIC18.59■□□□□ 0.57
DDX28Q9NUL7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 AL031432.3-201ENST00000607698 485 ntBASIC18.59■□□□□ 0.57
DDX28Q9NUL7 AC092666.2-201ENST00000613287 246 ntBASIC18.59■□□□□ 0.57
DDX28Q9NUL7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 PCDHAC2-203ENST00000615316 3011 ntBASIC18.59■□□□□ 0.57
DDX28Q9NUL7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DDX28Q9NUL7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
DDX28Q9NUL7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 AF213884.3-201ENST00000563833 479 ntBASIC18.58■□□□□ 0.56
DDX28Q9NUL7 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
DDX28Q9NUL7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms