Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 AC133681.1-201ENST00000465482 601 ntBASIC26.17■■□□□ 1.78
USP42Q9H9J4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP42Q9H9J4 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC26.17■■□□□ 1.78
USP42Q9H9J4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
USP42Q9H9J4 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP42Q9H9J4 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 ABHD17AP6-201ENST00000458502 1044 ntBASIC26.15■■□□□ 1.78
USP42Q9H9J4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 C2orf69P4-201ENST00000565394 541 ntBASIC26.15■■□□□ 1.78
USP42Q9H9J4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC26.15■■□□□ 1.78
USP42Q9H9J4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP42Q9H9J4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP42Q9H9J4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 KRT18P21-201ENST00000515767 1272 ntBASIC26.14■■□□□ 1.78
USP42Q9H9J4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 MAX-217ENST00000557277 728 ntTSL 3 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 AL049637.2-201ENST00000641778 930 ntBASIC26.14■■□□□ 1.78
USP42Q9H9J4 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
USP42Q9H9J4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP42Q9H9J4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC26.14■■□□□ 1.78
USP42Q9H9J4 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP42Q9H9J4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP42Q9H9J4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP42Q9H9J4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.77
USP42Q9H9J4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
USP42Q9H9J4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC26.14■■□□□ 1.77
USP42Q9H9J4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC26.14■■□□□ 1.77
USP42Q9H9J4 AL023875.1-201ENST00000640777 796 ntBASIC26.14■■□□□ 1.77
USP42Q9H9J4 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC26.13■■□□□ 1.77
USP42Q9H9J4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP42Q9H9J4 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP42Q9H9J4 KRT17P2-201ENST00000300992 1314 ntBASIC26.13■■□□□ 1.77
USP42Q9H9J4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC26.13■■□□□ 1.77
USP42Q9H9J4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC26.13■■□□□ 1.77
USP42Q9H9J4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP42Q9H9J4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC26.13■■□□□ 1.77
USP42Q9H9J4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP42Q9H9J4 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
USP42Q9H9J4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC26.12■■□□□ 1.77
USP42Q9H9J4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP42Q9H9J4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.12■■□□□ 1.77
USP42Q9H9J4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC26.12■■□□□ 1.77
USP42Q9H9J4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP42Q9H9J4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
USP42Q9H9J4 AC239809.2-201ENST00000415381 517 ntBASIC26.12■■□□□ 1.77
USP42Q9H9J4 THEM4-205ENST00000489410 643 ntTSL 2 BASIC26.12■■□□□ 1.77
USP42Q9H9J4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC26.12■■□□□ 1.77
USP42Q9H9J4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP42Q9H9J4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP42Q9H9J4 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC26.11■■□□□ 1.77
USP42Q9H9J4 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP42Q9H9J4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
USP42Q9H9J4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms