Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ECHDC3Q96DC8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ECHDC3Q96DC8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
ECHDC3Q96DC8 KRT8P36-201ENST00000489121 1440 ntBASIC20.52■□□□□ 0.87
ECHDC3Q96DC8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.87
ECHDC3Q96DC8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 AC097658.1-201ENST00000475555 843 ntBASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ECHDC3Q96DC8 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ECHDC3Q96DC8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 CLDN5-201ENST00000403084 2357 ntBASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 AL137060.1-201ENST00000618151 2648 ntBASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ECHDC3Q96DC8 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 KRT18P6-201ENST00000555540 1265 ntBASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ECHDC3Q96DC8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms