Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 FEM1AP1-201ENST00000431297 1995 ntBASIC18.27■□□□□ 0.52
CLRN1P58418 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
CLRN1P58418 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLRN1P58418 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLRN1P58418 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.27■□□□□ 0.51
CLRN1P58418 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CLRN1P58418 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CLRN1P58418 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLRN1P58418 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.26■□□□□ 0.51
CLRN1P58418 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.26■□□□□ 0.51
CLRN1P58418 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CLRN1P58418 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLRN1P58418 AC010536.3-201ENST00000620306 533 ntBASIC18.26■□□□□ 0.51
CLRN1P58418 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
CLRN1P58418 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.26■□□□□ 0.51
CLRN1P58418 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLRN1P58418 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CLRN1P58418 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CLRN1P58418 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.25■□□□□ 0.51
CLRN1P58418 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.25■□□□□ 0.51
CLRN1P58418 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLRN1P58418 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 AL162430.1-201ENST00000480705 870 ntBASIC18.25■□□□□ 0.51
CLRN1P58418 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.25■□□□□ 0.51
CLRN1P58418 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.25■□□□□ 0.51
CLRN1P58418 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.25■□□□□ 0.51
CLRN1P58418 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.25■□□□□ 0.51
CLRN1P58418 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLRN1P58418 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLRN1P58418 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.25■□□□□ 0.51
CLRN1P58418 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLRN1P58418 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 TERF1P5-201ENST00000477545 1207 ntBASIC18.24■□□□□ 0.51
CLRN1P58418 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLRN1P58418 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 AC027702.1-201ENST00000563810 1770 ntBASIC18.24■□□□□ 0.51
CLRN1P58418 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLRN1P58418 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.23■□□□□ 0.51
CLRN1P58418 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.23■□□□□ 0.51
CLRN1P58418 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CLRN1P58418 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CLRN1P58418 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.23■□□□□ 0.51
CLRN1P58418 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.23■□□□□ 0.51
CLRN1P58418 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLRN1P58418 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CLRN1P58418 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLRN1P58418 LINC01521-201ENST00000504184 1943 ntBASIC18.22■□□□□ 0.51
CLRN1P58418 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.22■□□□□ 0.51
CLRN1P58418 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.22■□□□□ 0.51
CLRN1P58418 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CLRN1P58418 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.22■□□□□ 0.51
CLRN1P58418 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms