Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 FEM1AP1-201ENST00000431297 1995 ntBASIC19.43■□□□□ 0.7
LIM2P55344 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.43■□□□□ 0.7
LIM2P55344 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LIM2P55344 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.43■□□□□ 0.7
LIM2P55344 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.43■□□□□ 0.7
LIM2P55344 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIM2P55344 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.43■□□□□ 0.7
LIM2P55344 CROCCP5-201ENST00000436658 830 ntBASIC19.43■□□□□ 0.7
LIM2P55344 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.43■□□□□ 0.7
LIM2P55344 RARRES2P4-201ENST00000514074 484 ntBASIC19.43■□□□□ 0.7
LIM2P55344 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIM2P55344 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LIM2P55344 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.43■□□□□ 0.7
LIM2P55344 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIM2P55344 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIM2P55344 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIM2P55344 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
LIM2P55344 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.42■□□□□ 0.7
LIM2P55344 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIM2P55344 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LIM2P55344 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.42■□□□□ 0.7
LIM2P55344 MIR663A-201ENST00000385250 93 ntBASIC19.42■□□□□ 0.7
LIM2P55344 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
LIM2P55344 AC069236.1-201ENST00000604339 616 ntBASIC19.42■□□□□ 0.7
LIM2P55344 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIM2P55344 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIM2P55344 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIM2P55344 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.42■□□□□ 0.7
LIM2P55344 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIM2P55344 AC027702.1-201ENST00000563810 1770 ntBASIC19.42■□□□□ 0.7
LIM2P55344 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
LIM2P55344 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.41■□□□□ 0.7
LIM2P55344 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.41■□□□□ 0.7
LIM2P55344 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.41■□□□□ 0.7
LIM2P55344 AL050303.2-201ENST00000619798 666 ntBASIC19.41■□□□□ 0.7
LIM2P55344 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.41■□□□□ 0.7
LIM2P55344 AC008694.1-202ENST00000636953 945 ntBASIC19.41■□□□□ 0.7
LIM2P55344 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.41■□□□□ 0.7
LIM2P55344 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.41■□□□□ 0.7
LIM2P55344 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIM2P55344 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIM2P55344 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.4■□□□□ 0.7
LIM2P55344 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.4■□□□□ 0.7
LIM2P55344 OR10C1-204ENST00000622521 1039 ntBASIC19.4■□□□□ 0.7
LIM2P55344 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.4■□□□□ 0.7
LIM2P55344 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
LIM2P55344 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.4■□□□□ 0.7
LIM2P55344 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.4■□□□□ 0.7
LIM2P55344 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.4■□□□□ 0.7
LIM2P55344 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIM2P55344 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.4■□□□□ 0.7
LIM2P55344 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIM2P55344 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIM2P55344 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIM2P55344 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.39■□□□□ 0.7
LIM2P55344 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIM2P55344 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIM2P55344 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIM2P55344 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIM2P55344 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.39■□□□□ 0.69
LIM2P55344 AC006970.2-201ENST00000450065 779 ntBASIC19.39■□□□□ 0.69
LIM2P55344 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms