Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
FOXA1P55317 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.82■□□□□ 0.76
FOXA1P55317 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
FOXA1P55317 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA1P55317 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA1P55317 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA1P55317 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA1P55317 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
FOXA1P55317 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.81■□□□□ 0.76
FOXA1P55317 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA1P55317 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
FOXA1P55317 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.81■□□□□ 0.76
FOXA1P55317 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.81■□□□□ 0.76
FOXA1P55317 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.81■□□□□ 0.76
FOXA1P55317 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
FOXA1P55317 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.81■□□□□ 0.76
FOXA1P55317 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.81■□□□□ 0.76
FOXA1P55317 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.81■□□□□ 0.76
FOXA1P55317 MIR2861-201ENST00000636310 90 ntBASIC19.81■□□□□ 0.76
FOXA1P55317 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.81■□□□□ 0.76
FOXA1P55317 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
FOXA1P55317 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.8■□□□□ 0.76
FOXA1P55317 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
FOXA1P55317 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA1P55317 SMG8-203ENST00000578922 2178 ntBASIC19.8■□□□□ 0.76
FOXA1P55317 AC004854.2-201ENST00000608450 1441 ntBASIC19.8■□□□□ 0.76
FOXA1P55317 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA1P55317 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.8■□□□□ 0.76
FOXA1P55317 AC123595.1-201ENST00000440769 1046 ntBASIC19.8■□□□□ 0.76
FOXA1P55317 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.8■□□□□ 0.76
FOXA1P55317 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.8■□□□□ 0.76
FOXA1P55317 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.8■□□□□ 0.76
FOXA1P55317 CCDC92B-201ENST00000575506 885 ntBASIC19.8■□□□□ 0.76
FOXA1P55317 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA1P55317 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
FOXA1P55317 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA1P55317 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.8■□□□□ 0.76
FOXA1P55317 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
FOXA1P55317 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.79■□□□□ 0.76
FOXA1P55317 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
FOXA1P55317 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 YBX1P1-201ENST00000445822 960 ntBASIC19.79■□□□□ 0.76
FOXA1P55317 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.79■□□□□ 0.76
FOXA1P55317 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FOXA1P55317 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.78■□□□□ 0.76
FOXA1P55317 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
FOXA1P55317 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
FOXA1P55317 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.78■□□□□ 0.76
FOXA1P55317 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
FOXA1P55317 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
FOXA1P55317 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.78■□□□□ 0.76
FOXA1P55317 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.78■□□□□ 0.76
FOXA1P55317 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.78■□□□□ 0.76
FOXA1P55317 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.78■□□□□ 0.76
FOXA1P55317 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 TCF3P1-201ENST00000423021 1937 ntBASIC19.78■□□□□ 0.76
FOXA1P55317 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FOXA1P55317 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA1P55317 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA1P55317 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA1P55317 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA1P55317 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
FOXA1P55317 AC091799.1-201ENST00000422823 811 ntBASIC19.77■□□□□ 0.76
FOXA1P55317 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA1P55317 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA1P55317 KRT18P14-201ENST00000534205 1250 ntBASIC19.77■□□□□ 0.76
FOXA1P55317 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.77■□□□□ 0.76
FOXA1P55317 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.77■□□□□ 0.76
FOXA1P55317 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA1P55317 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.77■□□□□ 0.76
FOXA1P55317 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.77■□□□□ 0.76
FOXA1P55317 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FOXA1P55317 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
FOXA1P55317 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
FOXA1P55317 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
FOXA1P55317 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms