Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CXCL12P48061 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CXCL12P48061 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.53■□□□□ 0.88
CXCL12P48061 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.53■□□□□ 0.88
CXCL12P48061 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.53■□□□□ 0.88
CXCL12P48061 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.53■□□□□ 0.88
CXCL12P48061 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CXCL12P48061 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CXCL12P48061 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.53■□□□□ 0.88
CXCL12P48061 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CXCL12P48061 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
CXCL12P48061 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CXCL12P48061 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.52■□□□□ 0.88
CXCL12P48061 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CXCL12P48061 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.52■□□□□ 0.88
CXCL12P48061 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CXCL12P48061 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CXCL12P48061 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.51■□□□□ 0.87
CXCL12P48061 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.51■□□□□ 0.87
CXCL12P48061 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.51■□□□□ 0.87
CXCL12P48061 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.51■□□□□ 0.87
CXCL12P48061 AF186192.3-201ENST00000583427 947 ntBASIC20.51■□□□□ 0.87
CXCL12P48061 AL590326.2-201ENST00000625139 305 ntBASIC20.51■□□□□ 0.87
CXCL12P48061 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CXCL12P48061 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 AC127496.7-201ENST00000625110 1798 ntBASIC20.51■□□□□ 0.87
CXCL12P48061 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CXCL12P48061 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
CXCL12P48061 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.5■□□□□ 0.87
CXCL12P48061 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.5■□□□□ 0.87
CXCL12P48061 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.5■□□□□ 0.87
CXCL12P48061 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.5■□□□□ 0.87
CXCL12P48061 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 AL049597.2-201ENST00000565575 961 ntBASIC20.5■□□□□ 0.87
CXCL12P48061 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.5■□□□□ 0.87
CXCL12P48061 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.5■□□□□ 0.87
CXCL12P48061 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.5■□□□□ 0.87
CXCL12P48061 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.5■□□□□ 0.87
CXCL12P48061 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.5■□□□□ 0.87
CXCL12P48061 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.5■□□□□ 0.87
CXCL12P48061 HTR7P1-201ENST00000538670 1336 ntBASIC20.5■□□□□ 0.87
CXCL12P48061 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CXCL12P48061 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.49■□□□□ 0.87
CXCL12P48061 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.49■□□□□ 0.87
CXCL12P48061 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 AL353807.1-201ENST00000427475 662 ntBASIC20.49■□□□□ 0.87
CXCL12P48061 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.49■□□□□ 0.87
CXCL12P48061 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.49■□□□□ 0.87
CXCL12P48061 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CXCL12P48061 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms