Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPA3P35244 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
RPA3P35244 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPA3P35244 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RPA3P35244 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RPA3P35244 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPA3P35244 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RPA3P35244 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RPA3P35244 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RPA3P35244 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.64■□□□□ 0.89
RPA3P35244 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RPA3P35244 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RPA3P35244 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RPA3P35244 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.63■□□□□ 0.89
RPA3P35244 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.63■□□□□ 0.89
RPA3P35244 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
RPA3P35244 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.63■□□□□ 0.89
RPA3P35244 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.63■□□□□ 0.89
RPA3P35244 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RPA3P35244 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.63■□□□□ 0.89
RPA3P35244 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.63■□□□□ 0.89
RPA3P35244 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RPA3P35244 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
RPA3P35244 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RPA3P35244 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.62■□□□□ 0.89
RPA3P35244 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 AC055733.4-201ENST00000638462 1354 ntBASIC20.62■□□□□ 0.89
RPA3P35244 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.62■□□□□ 0.89
RPA3P35244 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.62■□□□□ 0.89
RPA3P35244 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.62■□□□□ 0.89
RPA3P35244 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
RPA3P35244 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RPA3P35244 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RPA3P35244 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RPA3P35244 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RPA3P35244 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 AC097381.1-201ENST00000429019 1296 ntBASIC20.61■□□□□ 0.89
RPA3P35244 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.61■□□□□ 0.89
RPA3P35244 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.61■□□□□ 0.89
RPA3P35244 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
RPA3P35244 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.61■□□□□ 0.89
RPA3P35244 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
RPA3P35244 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RPA3P35244 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.61■□□□□ 0.89
RPA3P35244 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
RPA3P35244 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.61■□□□□ 0.89
RPA3P35244 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RPA3P35244 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.6■□□□□ 0.89
RPA3P35244 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 AC079140.4-201ENST00000507448 529 ntBASIC20.6■□□□□ 0.89
RPA3P35244 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.6■□□□□ 0.89
RPA3P35244 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.6■□□□□ 0.89
RPA3P35244 RARRES2P6-201ENST00000567333 442 ntBASIC20.6■□□□□ 0.89
RPA3P35244 CCDC92B-201ENST00000575506 885 ntBASIC20.6■□□□□ 0.89
RPA3P35244 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.6■□□□□ 0.89
RPA3P35244 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RPA3P35244 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms