Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.34■□□□□ 0.85
MSH3P20585 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.34■□□□□ 0.85
MSH3P20585 AL050303.2-201ENST00000619798 666 ntBASIC20.34■□□□□ 0.85
MSH3P20585 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
MSH3P20585 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH3P20585 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH3P20585 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
MSH3P20585 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH3P20585 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
MSH3P20585 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH3P20585 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.33■□□□□ 0.85
MSH3P20585 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH3P20585 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH3P20585 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH3P20585 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC20.33■□□□□ 0.85
MSH3P20585 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.33■□□□□ 0.85
MSH3P20585 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH3P20585 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.33■□□□□ 0.85
MSH3P20585 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
MSH3P20585 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
MSH3P20585 PLK5-205ENST00000642079 1969 ntBASIC20.33■□□□□ 0.84
MSH3P20585 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
MSH3P20585 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
MSH3P20585 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
MSH3P20585 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
MSH3P20585 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH3P20585 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.32■□□□□ 0.84
MSH3P20585 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 AF201337.1-201ENST00000520239 748 ntBASIC20.32■□□□□ 0.84
MSH3P20585 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH3P20585 AC105036.2-201ENST00000569468 176 ntBASIC20.32■□□□□ 0.84
MSH3P20585 AC133552.2-202ENST00000575694 574 ntBASIC20.32■□□□□ 0.84
MSH3P20585 AL121832.2-201ENST00000610979 668 ntBASIC20.32■□□□□ 0.84
MSH3P20585 SLC25A24-204ENST00000569674 2357 ntBASIC20.32■□□□□ 0.84
MSH3P20585 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH3P20585 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
MSH3P20585 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.31■□□□□ 0.84
MSH3P20585 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
MSH3P20585 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
MSH3P20585 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MSH3P20585 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
MSH3P20585 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH3P20585 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH3P20585 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.31■□□□□ 0.84
MSH3P20585 AC006128.1-201ENST00000624704 1661 ntBASIC20.31■□□□□ 0.84
MSH3P20585 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH3P20585 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.31■□□□□ 0.84
MSH3P20585 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH3P20585 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.31■□□□□ 0.84
MSH3P20585 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MSH3P20585 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH3P20585 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH3P20585 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH3P20585 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH3P20585 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.3■□□□□ 0.84
MSH3P20585 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH3P20585 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.3■□□□□ 0.84
MSH3P20585 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.3■□□□□ 0.84
MSH3P20585 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.3■□□□□ 0.84
MSH3P20585 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH3P20585 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH3P20585 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
MSH3P20585 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH3P20585 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.3■□□□□ 0.84
MSH3P20585 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH3P20585 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH3P20585 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms