Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.35■■□□□ 1.01
HMGA1P17096 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGA1P17096 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.35■■□□□ 1.01
HMGA1P17096 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.35■■□□□ 1.01
HMGA1P17096 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.35■■□□□ 1.01
HMGA1P17096 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
HMGA1P17096 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
HMGA1P17096 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGA1P17096 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGA1P17096 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
HMGA1P17096 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
HMGA1P17096 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
HMGA1P17096 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGA1P17096 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
HMGA1P17096 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.34■■□□□ 1.01
HMGA1P17096 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.34■■□□□ 1.01
HMGA1P17096 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
HMGA1P17096 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGA1P17096 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
HMGA1P17096 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
HMGA1P17096 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGA1P17096 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.34■■□□□ 1.01
HMGA1P17096 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGA1P17096 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HMGA1P17096 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HMGA1P17096 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.33■■□□□ 1.01
HMGA1P17096 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGA1P17096 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HMGA1P17096 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.33■■□□□ 1.01
HMGA1P17096 KRT17P3-201ENST00000420566 1262 ntBASIC21.33■■□□□ 1.01
HMGA1P17096 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.33■■□□□ 1.01
HMGA1P17096 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.33■■□□□ 1.01
HMGA1P17096 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.33■■□□□ 1.01
HMGA1P17096 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGA1P17096 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGA1P17096 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGA1P17096 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
HMGA1P17096 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HMGA1P17096 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
HMGA1P17096 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
HMGA1P17096 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.32■■□□□ 1
HMGA1P17096 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.32■■□□□ 1
HMGA1P17096 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.32■■□□□ 1
HMGA1P17096 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.32■■□□□ 1
HMGA1P17096 AL359736.2-201ENST00000621992 437 ntBASIC21.32■■□□□ 1
HMGA1P17096 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGA1P17096 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.32■■□□□ 1
HMGA1P17096 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.32■■□□□ 1
HMGA1P17096 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HMGA1P17096 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.31■■□□□ 1
HMGA1P17096 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.31■■□□□ 1
HMGA1P17096 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.31■■□□□ 1
HMGA1P17096 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.31■■□□□ 1
HMGA1P17096 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.31■■□□□ 1
HMGA1P17096 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.31■■□□□ 1
HMGA1P17096 RN7SL471P-201ENST00000580476 299 ntBASIC21.31■■□□□ 1
HMGA1P17096 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 AC069544.1-201ENST00000609399 999 ntBASIC21.31■■□□□ 1
HMGA1P17096 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.31■■□□□ 1
HMGA1P17096 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
HMGA1P17096 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGA1P17096 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 FEM1AP4-201ENST00000443167 1987 ntBASIC21.3■■□□□ 1
HMGA1P17096 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGA1P17096 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.3■■□□□ 1
HMGA1P17096 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGA1P17096 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
HMGA1P17096 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGA1P17096 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms