Protein–RNA interactions for Protein: P16619

CCL3L1, C-C motif chemokine 3-like 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3L1P16619 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCL3L1P16619 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.9■□□□□ 0.3
CCL3L1P16619 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCL3L1P16619 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCL3L1P16619 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCL3L1P16619 AC027702.1-201ENST00000563810 1770 ntBASIC16.89■□□□□ 0.3
CCL3L1P16619 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.89■□□□□ 0.29
CCL3L1P16619 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.89■□□□□ 0.29
CCL3L1P16619 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.89■□□□□ 0.29
CCL3L1P16619 AC093787.1-201ENST00000450396 207 ntBASIC16.89■□□□□ 0.29
CCL3L1P16619 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.89■□□□□ 0.29
CCL3L1P16619 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.89■□□□□ 0.29
CCL3L1P16619 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC16.89■□□□□ 0.29
CCL3L1P16619 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.89■□□□□ 0.29
CCL3L1P16619 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.89■□□□□ 0.29
CCL3L1P16619 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC16.89■□□□□ 0.29
CCL3L1P16619 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCL3L1P16619 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.88■□□□□ 0.29
CCL3L1P16619 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.88■□□□□ 0.29
CCL3L1P16619 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.88■□□□□ 0.29
CCL3L1P16619 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.88■□□□□ 0.29
CCL3L1P16619 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.88■□□□□ 0.29
CCL3L1P16619 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.88■□□□□ 0.29
CCL3L1P16619 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.88■□□□□ 0.29
CCL3L1P16619 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.88■□□□□ 0.29
CCL3L1P16619 OR10C1-204ENST00000622521 1039 ntBASIC16.88■□□□□ 0.29
CCL3L1P16619 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.88■□□□□ 0.29
CCL3L1P16619 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.88■□□□□ 0.29
CCL3L1P16619 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCL3L1P16619 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.88■□□□□ 0.29
CCL3L1P16619 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CCL3L1P16619 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 CYP21A1P-202ENST00000354927 1481 ntBASIC16.87■□□□□ 0.29
CCL3L1P16619 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCL3L1P16619 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
CCL3L1P16619 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
CCL3L1P16619 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
CCL3L1P16619 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.87■□□□□ 0.29
CCL3L1P16619 AC105036.2-201ENST00000569468 176 ntBASIC16.87■□□□□ 0.29
CCL3L1P16619 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.87■□□□□ 0.29
CCL3L1P16619 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCL3L1P16619 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.86■□□□□ 0.29
CCL3L1P16619 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.86■□□□□ 0.29
CCL3L1P16619 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 AF201337.1-201ENST00000520239 748 ntBASIC16.86■□□□□ 0.29
CCL3L1P16619 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 AC133552.2-202ENST00000575694 574 ntBASIC16.86■□□□□ 0.29
CCL3L1P16619 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.86■□□□□ 0.29
CCL3L1P16619 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCL3L1P16619 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
CCL3L1P16619 AC007225.1-201ENST00000566331 1836 ntBASIC16.86■□□□□ 0.29
CCL3L1P16619 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms