Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.87■□□□□ 0.77
PCNAP12004 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
PCNAP12004 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.87■□□□□ 0.77
PCNAP12004 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PCNAP12004 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.87■□□□□ 0.77
PCNAP12004 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 AC011484.1-201ENST00000377652 1995 ntBASIC19.86■□□□□ 0.77
PCNAP12004 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.86■□□□□ 0.77
PCNAP12004 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.86■□□□□ 0.77
PCNAP12004 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.86■□□□□ 0.77
PCNAP12004 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.86■□□□□ 0.77
PCNAP12004 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.86■□□□□ 0.77
PCNAP12004 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
PCNAP12004 AC026271.2-201ENST00000428091 497 ntBASIC19.86■□□□□ 0.77
PCNAP12004 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.86■□□□□ 0.77
PCNAP12004 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.86■□□□□ 0.77
PCNAP12004 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.86■□□□□ 0.77
PCNAP12004 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.86■□□□□ 0.77
PCNAP12004 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.86■□□□□ 0.77
PCNAP12004 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
PCNAP12004 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PCNAP12004 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.85■□□□□ 0.77
PCNAP12004 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
PCNAP12004 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
PCNAP12004 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.85■□□□□ 0.77
PCNAP12004 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.85■□□□□ 0.77
PCNAP12004 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.85■□□□□ 0.77
PCNAP12004 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.85■□□□□ 0.77
PCNAP12004 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.85■□□□□ 0.77
PCNAP12004 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
PCNAP12004 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.85■□□□□ 0.77
PCNAP12004 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PCNAP12004 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
PCNAP12004 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
PCNAP12004 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.84■□□□□ 0.77
PCNAP12004 KRT18P5-201ENST00000436075 1291 ntBASIC19.84■□□□□ 0.77
PCNAP12004 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.84■□□□□ 0.77
PCNAP12004 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.84■□□□□ 0.77
PCNAP12004 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.84■□□□□ 0.77
PCNAP12004 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCNAP12004 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PCNAP12004 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PCNAP12004 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
PCNAP12004 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PCNAP12004 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCNAP12004 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCNAP12004 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
PCNAP12004 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PCNAP12004 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PCNAP12004 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.83■□□□□ 0.77
PCNAP12004 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.83■□□□□ 0.77
PCNAP12004 MYCNOS-205ENST00000641950 531 ntBASIC19.83■□□□□ 0.77
PCNAP12004 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCNAP12004 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
PCNAP12004 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.83■□□□□ 0.76
PCNAP12004 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PCNAP12004 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PCNAP12004 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
PCNAP12004 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.83■□□□□ 0.76
PCNAP12004 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.83■□□□□ 0.76
PCNAP12004 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms