Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HLA-DQA1P01909 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 AC005082.1-201ENST00000413042 2259 ntBASIC15.37■□□□□ 0.05
HLA-DQA1P01909 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HLA-DQA1P01909 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HLA-DQA1P01909 AL158211.5-201ENST00000623583 2518 ntBASIC15.36■□□□□ 0.05
HLA-DQA1P01909 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 FP700111.2-201ENST00000619190 1892 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 NEFHP1-201ENST00000412845 2629 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AC005332.7-201ENST00000614046 2005 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AC003102.1-202ENST00000563394 1796 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 BX664725.1-201ENST00000438252 379 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AL031602.1-201ENST00000633169 911 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AC005703.6-201ENST00000623265 1329 ntBASIC15.35■□□□□ 0.05
HLA-DQA1P01909 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
HLA-DQA1P01909 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC15.34■□□□□ 0.05
HLA-DQA1P01909 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms