Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TNFP01375 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.04■□□□□ 0.8
TNFP01375 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.04■□□□□ 0.8
TNFP01375 AC073648.6-201ENST00000641589 218 ntBASIC20.04■□□□□ 0.8
TNFP01375 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TNFP01375 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.03■□□□□ 0.8
TNFP01375 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TNFP01375 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.03■□□□□ 0.8
TNFP01375 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TNFP01375 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.03■□□□□ 0.8
TNFP01375 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
TNFP01375 KRT17P3-201ENST00000420566 1262 ntBASIC20.03■□□□□ 0.8
TNFP01375 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.03■□□□□ 0.8
TNFP01375 AC142381.4-202ENST00000563973 229 ntBASIC20.03■□□□□ 0.8
TNFP01375 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TNFP01375 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TNFP01375 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TNFP01375 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.02■□□□□ 0.8
TNFP01375 SOX15-203ENST00000570788 1093 ntBASIC20.02■□□□□ 0.8
TNFP01375 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFP01375 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TNFP01375 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.02■□□□□ 0.8
TNFP01375 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
TNFP01375 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
TNFP01375 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
TNFP01375 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TNFP01375 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TNFP01375 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.01■□□□□ 0.79
TNFP01375 AC098590.1-201ENST00000468126 897 ntBASIC20.01■□□□□ 0.79
TNFP01375 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
TNFP01375 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFP01375 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFP01375 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.01■□□□□ 0.79
TNFP01375 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.01■□□□□ 0.79
TNFP01375 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TNFP01375 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.01■□□□□ 0.79
TNFP01375 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TNFP01375 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20■□□□□ 0.79
TNFP01375 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20■□□□□ 0.79
TNFP01375 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20■□□□□ 0.79
TNFP01375 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TNFP01375 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TNFP01375 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20■□□□□ 0.79
TNFP01375 GCSHP5-201ENST00000443090 522 ntBASIC20■□□□□ 0.79
TNFP01375 AL158047.1-201ENST00000445918 881 ntBASIC20■□□□□ 0.79
TNFP01375 RPS2P52-201ENST00000469610 820 ntBASIC20■□□□□ 0.79
TNFP01375 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20■□□□□ 0.79
TNFP01375 SLC29A4P2-201ENST00000504749 1089 ntBASIC20■□□□□ 0.79
TNFP01375 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TNFP01375 DET1-205ENST00000558413 583 ntTSL 4 BASIC20■□□□□ 0.79
TNFP01375 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20■□□□□ 0.79
TNFP01375 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
TNFP01375 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20■□□□□ 0.79
TNFP01375 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20■□□□□ 0.79
TNFP01375 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TNFP01375 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms