Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 FAM197Y4-202ENST00000622692 608 ntBASIC32.16■■■□□ 2.74
PCF11O94913 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
PCF11O94913 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
PCF11O94913 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
PCF11O94913 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 KRT17P3-201ENST00000420566 1262 ntBASIC32.15■■■□□ 2.74
PCF11O94913 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC32.15■■■□□ 2.74
PCF11O94913 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC32.15■■■□□ 2.74
PCF11O94913 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC32.15■■■□□ 2.74
PCF11O94913 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC32.15■■■□□ 2.74
PCF11O94913 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC32.15■■■□□ 2.74
PCF11O94913 AC012676.1-201ENST00000574705 1949 ntBASIC32.15■■■□□ 2.74
PCF11O94913 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC32.15■■■□□ 2.74
PCF11O94913 GGT1-206ENST00000404223 952 ntTSL 2 BASIC32.15■■■□□ 2.74
PCF11O94913 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC32.15■■■□□ 2.74
PCF11O94913 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC32.15■■■□□ 2.74
PCF11O94913 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
PCF11O94913 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC32.14■■■□□ 2.74
PCF11O94913 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC32.14■■■□□ 2.74
PCF11O94913 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
PCF11O94913 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC32.14■■■□□ 2.74
PCF11O94913 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
PCF11O94913 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC32.14■■■□□ 2.74
PCF11O94913 RPS20-210ENST00000523936 899 ntTSL 2 BASIC32.14■■■□□ 2.74
PCF11O94913 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.74
PCF11O94913 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC32.14■■■□□ 2.74
PCF11O94913 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC32.14■■■□□ 2.73
PCF11O94913 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC32.14■■■□□ 2.73
PCF11O94913 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC32.13■■■□□ 2.73
PCF11O94913 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
PCF11O94913 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
PCF11O94913 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC32.13■■■□□ 2.73
PCF11O94913 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC32.13■■■□□ 2.73
PCF11O94913 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
PCF11O94913 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC32.13■■■□□ 2.73
PCF11O94913 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC32.13■■■□□ 2.73
PCF11O94913 AC005829.2-201ENST00000571422 1056 ntBASIC32.13■■■□□ 2.73
PCF11O94913 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
PCF11O94913 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC32.13■■■□□ 2.73
PCF11O94913 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
PCF11O94913 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
PCF11O94913 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC32.12■■■□□ 2.73
PCF11O94913 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC32.12■■■□□ 2.73
PCF11O94913 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC32.12■■■□□ 2.73
PCF11O94913 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC32.12■■■□□ 2.73
PCF11O94913 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC32.12■■■□□ 2.73
PCF11O94913 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
PCF11O94913 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC32.12■■■□□ 2.73
PCF11O94913 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC32.12■■■□□ 2.73
PCF11O94913 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
PCF11O94913 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
PCF11O94913 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC32.11■■■□□ 2.73
PCF11O94913 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC32.11■■■□□ 2.73
PCF11O94913 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC32.11■■■□□ 2.73
PCF11O94913 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
PCF11O94913 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC32.11■■■□□ 2.73
PCF11O94913 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
PCF11O94913 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
PCF11O94913 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC32.11■■■□□ 2.73
PCF11O94913 MDFI-202ENST00000373050 809 ntTSL 2 BASIC32.11■■■□□ 2.73
PCF11O94913 UBE2SP1-201ENST00000450587 669 ntBASIC32.11■■■□□ 2.73
PCF11O94913 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC32.11■■■□□ 2.73
PCF11O94913 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
PCF11O94913 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC32.1■■■□□ 2.73
PCF11O94913 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
PCF11O94913 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC32.1■■■□□ 2.73
PCF11O94913 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC32.1■■■□□ 2.73
PCF11O94913 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
PCF11O94913 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
PCF11O94913 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
PCF11O94913 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
PCF11O94913 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC32.1■■■□□ 2.73
PCF11O94913 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC32.1■■■□□ 2.73
PCF11O94913 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC32.1■■■□□ 2.73
PCF11O94913 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC32.1■■■□□ 2.73
PCF11O94913 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC32.09■■■□□ 2.73
PCF11O94913 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC32.09■■■□□ 2.73
PCF11O94913 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC32.09■■■□□ 2.73
PCF11O94913 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 RN7SL471P-201ENST00000580476 299 ntBASIC32.09■■■□□ 2.73
PCF11O94913 MTDHP1-201ENST00000605323 784 ntBASIC32.09■■■□□ 2.73
PCF11O94913 AC124016.1-201ENST00000609552 612 ntBASIC32.09■■■□□ 2.73
PCF11O94913 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC32.09■■■□□ 2.73
PCF11O94913 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCF11O94913 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
PCF11O94913 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms