Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
HDAC3O15379 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 MIR572-201ENST00000384983 95 ntBASIC19.89■□□□□ 0.77
HDAC3O15379 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC3O15379 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC3O15379 POU5F1P4-201ENST00000413175 1085 ntBASIC19.89■□□□□ 0.77
HDAC3O15379 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
HDAC3O15379 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.89■□□□□ 0.77
HDAC3O15379 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.89■□□□□ 0.77
HDAC3O15379 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
HDAC3O15379 AC027682.1-201ENST00000562846 899 ntBASIC19.89■□□□□ 0.77
HDAC3O15379 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.89■□□□□ 0.77
HDAC3O15379 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
HDAC3O15379 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
HDAC3O15379 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDAC3O15379 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
HDAC3O15379 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.88■□□□□ 0.77
HDAC3O15379 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.88■□□□□ 0.77
HDAC3O15379 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
HDAC3O15379 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.88■□□□□ 0.77
HDAC3O15379 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.88■□□□□ 0.77
HDAC3O15379 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.88■□□□□ 0.77
HDAC3O15379 AC008175.2-201ENST00000612840 297 ntBASIC19.88■□□□□ 0.77
HDAC3O15379 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.88■□□□□ 0.77
HDAC3O15379 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.88■□□□□ 0.77
HDAC3O15379 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDAC3O15379 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HDAC3O15379 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HDAC3O15379 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.87■□□□□ 0.77
HDAC3O15379 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.87■□□□□ 0.77
HDAC3O15379 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.87■□□□□ 0.77
HDAC3O15379 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.87■□□□□ 0.77
HDAC3O15379 RARRES2P11-201ENST00000635158 484 ntBASIC19.87■□□□□ 0.77
HDAC3O15379 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
HDAC3O15379 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDAC3O15379 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HDAC3O15379 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HDAC3O15379 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.86■□□□□ 0.77
HDAC3O15379 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.86■□□□□ 0.77
HDAC3O15379 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
HDAC3O15379 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 AC087289.5-201ENST00000586076 3175 ntBASIC19.86■□□□□ 0.77
HDAC3O15379 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.86■□□□□ 0.77
HDAC3O15379 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HDAC3O15379 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms