Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 AC123595.1-201ENST00000440769 1046 ntBASIC22.06■■□□□ 1.12
LRRC53A6NM62 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 MIR2861-201ENST00000636310 90 ntBASIC22.06■■□□□ 1.12
LRRC53A6NM62 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC22.06■■□□□ 1.12
LRRC53A6NM62 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LRRC53A6NM62 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LRRC53A6NM62 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LRRC53A6NM62 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
LRRC53A6NM62 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
LRRC53A6NM62 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
LRRC53A6NM62 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
LRRC53A6NM62 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
LRRC53A6NM62 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LRRC53A6NM62 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LRRC53A6NM62 YBX1P1-201ENST00000445822 960 ntBASIC22.03■■□□□ 1.12
LRRC53A6NM62 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 CCDC92B-201ENST00000575506 885 ntBASIC22.03■■□□□ 1.12
LRRC53A6NM62 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
LRRC53A6NM62 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
LRRC53A6NM62 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LRRC53A6NM62 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 COX20-201ENST00000366528 568 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 TESC-206ENST00000541210 936 ntTSL 3 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 AC004854.2-201ENST00000608450 1441 ntBASIC22.02■■□□□ 1.12
LRRC53A6NM62 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRC53A6NM62 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRC53A6NM62 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.11
LRRC53A6NM62 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRC53A6NM62 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
LRRC53A6NM62 SMG8-203ENST00000578922 2178 ntBASIC22.01■■□□□ 1.11
LRRC53A6NM62 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRC53A6NM62 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRC53A6NM62 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRC53A6NM62 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.01■■□□□ 1.11
LRRC53A6NM62 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
LRRC53A6NM62 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRC53A6NM62 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.01■■□□□ 1.11
LRRC53A6NM62 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRC53A6NM62 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC22.01■■□□□ 1.11
LRRC53A6NM62 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.01■■□□□ 1.11
LRRC53A6NM62 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LRRC53A6NM62 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
LRRC53A6NM62 TCF3P1-201ENST00000423021 1937 ntBASIC22■■□□□ 1.11
LRRC53A6NM62 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22■■□□□ 1.11
LRRC53A6NM62 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
LRRC53A6NM62 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LRRC53A6NM62 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms