Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 AC026366.1-201ENST00000488803 879 ntBASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 AC092368.3-202ENST00000574180 1591 ntBASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 PGM5P4-201ENST00000421970 445 ntBASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 AC087633.2-202ENST00000565166 1439 ntBASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
TRAV40A0A0B4J280 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 PNMA6B-201ENST00000538162 1200 ntBASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.68■□□□□ 0.26
TRAV40A0A0B4J280 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 Z98882.1-201ENST00000622160 2253 ntBASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 AC128676.1-201ENST00000454392 318 ntBASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 AC098590.1-201ENST00000468126 897 ntBASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 PARN-205ENST00000539279 1557 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.67■□□□□ 0.26
TRAV40A0A0B4J280 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms