Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 AC133561.5-201ENST00000635547 218 ntBASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 AC097493.4-201ENST00000641197 219 ntBASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 CLDN5-201ENST00000403084 2357 ntBASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 AC068473.5-201ENST00000616428 2072 ntBASIC19.79■□□□□ 0.76
PCDHGA1Q9Y5H4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 AC087499.1-201ENST00000418141 1075 ntBASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 PGM5P4-201ENST00000421970 445 ntBASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PCDHGA1Q9Y5H4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC087633.2-202ENST00000565166 1439 ntBASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC079834.2-201ENST00000609776 1949 ntBASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC113410.3-201ENST00000623366 203 ntBASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.77■□□□□ 0.76
PCDHGA1Q9Y5H4 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.75
PCDHGA1Q9Y5H4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
PCDHGA1Q9Y5H4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
PCDHGA1Q9Y5H4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 AC012306.2-201ENST00000609350 630 ntBASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHGA1Q9Y5H4 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 KRASP1-201ENST00000407852 552 ntBASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 PRKY-204ENST00000533551 1019 ntBASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHGA1Q9Y5H4 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms