Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 SLC7A5P1-201ENST00000568957 537 ntBASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.5■□□□□ 0.55
HIF3AQ9Y2N7 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 AC243732.1-201ENST00000612648 864 ntBASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.49■□□□□ 0.55
HIF3AQ9Y2N7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HIF3AQ9Y2N7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 AC138932.1-201ENST00000534164 6830 ntBASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 KRT19P1-201ENST00000405746 1186 ntBASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 RBM17P2-201ENST00000616397 1405 ntBASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HIF3AQ9Y2N7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HIF3AQ9Y2N7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HIF3AQ9Y2N7 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.46■□□□□ 0.55
HIF3AQ9Y2N7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms