Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 SUDS3P1-201ENST00000505831 966 ntBASIC17.85■□□□□ 0.45
NKX3-1Q99801 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 AP001330.3-201ENST00000520123 633 ntBASIC17.85■□□□□ 0.45
NKX3-1Q99801 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NKX3-1Q99801 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX3-1Q99801 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
NKX3-1Q99801 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 ZNRF2P3-201ENST00000424200 374 ntBASIC17.84■□□□□ 0.45
NKX3-1Q99801 AC105265.2-201ENST00000467189 838 ntBASIC17.84■□□□□ 0.45
NKX3-1Q99801 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX3-1Q99801 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.84■□□□□ 0.45
NKX3-1Q99801 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.83■□□□□ 0.45
NKX3-1Q99801 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
NKX3-1Q99801 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NKX3-1Q99801 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.83■□□□□ 0.45
NKX3-1Q99801 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
NKX3-1Q99801 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.83■□□□□ 0.45
NKX3-1Q99801 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NKX3-1Q99801 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NKX3-1Q99801 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
NKX3-1Q99801 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
NKX3-1Q99801 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
NKX3-1Q99801 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 AL136967.2-201ENST00000623968 743 ntBASIC17.83■□□□□ 0.44
NKX3-1Q99801 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
NKX3-1Q99801 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.83■□□□□ 0.44
NKX3-1Q99801 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
NKX3-1Q99801 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 MIR939-201ENST00000401314 82 ntBASIC17.82■□□□□ 0.44
NKX3-1Q99801 AC091305.1-201ENST00000479476 895 ntBASIC17.82■□□□□ 0.44
NKX3-1Q99801 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 AC027682.1-201ENST00000562846 899 ntBASIC17.82■□□□□ 0.44
NKX3-1Q99801 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 AC099778.1-201ENST00000568593 1911 ntBASIC17.82■□□□□ 0.44
NKX3-1Q99801 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
NKX3-1Q99801 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
NKX3-1Q99801 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
NKX3-1Q99801 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.81■□□□□ 0.44
NKX3-1Q99801 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms