Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LRCH3Q96II8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
LRCH3Q96II8 CYP2D8P-201ENST00000433633 1490 ntBASIC22.34■■□□□ 1.17
LRCH3Q96II8 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC22.34■■□□□ 1.17
LRCH3Q96II8 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
LRCH3Q96II8 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.34■■□□□ 1.17
LRCH3Q96II8 AF186192.3-201ENST00000583427 947 ntBASIC22.34■■□□□ 1.17
LRCH3Q96II8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC22.34■■□□□ 1.17
LRCH3Q96II8 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
LRCH3Q96II8 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
LRCH3Q96II8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 DUSP5P1-201ENST00000441325 1139 ntBASIC22.33■■□□□ 1.17
LRCH3Q96II8 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC22.33■■□□□ 1.17
LRCH3Q96II8 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC22.33■■□□□ 1.17
LRCH3Q96II8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC22.33■■□□□ 1.17
LRCH3Q96II8 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
LRCH3Q96II8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
LRCH3Q96II8 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 AC006011.2-201ENST00000621313 1158 ntBASIC22.32■■□□□ 1.16
LRCH3Q96II8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.32■■□□□ 1.16
LRCH3Q96II8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LRCH3Q96II8 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LRCH3Q96II8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LRCH3Q96II8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LRCH3Q96II8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LRCH3Q96II8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 NAPSB-206ENST00000562112 1266 ntBASIC22.31■■□□□ 1.16
LRCH3Q96II8 AL031963.3-201ENST00000606441 850 ntBASIC22.31■■□□□ 1.16
LRCH3Q96II8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
LRCH3Q96II8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LRCH3Q96II8 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LRCH3Q96II8 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRCH3Q96II8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRCH3Q96II8 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.3■■□□□ 1.16
LRCH3Q96II8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRCH3Q96II8 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC22.3■■□□□ 1.16
LRCH3Q96II8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
LRCH3Q96II8 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.3■■□□□ 1.16
LRCH3Q96II8 LINC00526-201ENST00000581067 1875 ntBASIC22.3■■□□□ 1.16
LRCH3Q96II8 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 UNC93B2-201ENST00000285383 730 ntBASIC22.29■■□□□ 1.16
LRCH3Q96II8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 AL390955.1-201ENST00000428694 934 ntBASIC22.29■■□□□ 1.16
LRCH3Q96II8 AC010203.1-204ENST00000548782 407 ntBASIC22.29■■□□□ 1.16
LRCH3Q96II8 AC010947.1-201ENST00000623454 693 ntBASIC22.29■■□□□ 1.16
LRCH3Q96II8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRCH3Q96II8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC22.29■■□□□ 1.16
LRCH3Q96II8 HTR7P1-201ENST00000538670 1336 ntBASIC22.29■■□□□ 1.16
LRCH3Q96II8 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC22.28■■□□□ 1.16
LRCH3Q96II8 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
LRCH3Q96II8 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
LRCH3Q96II8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRCH3Q96II8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms