Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 TSPY20P-201ENST00000450910 630 ntBASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP3Q96DZ5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.71■□□□□ 0.75
CLIP3Q96DZ5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 AIRN-201ENST00000601203 4374 ntBASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 RNA5SP413-201ENST00000516373 109 ntBASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 FAM21FP-204ENST00000608637 956 ntBASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP3Q96DZ5 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 LSM12P1-201ENST00000411836 588 ntBASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 FAM201B-201ENST00000458407 597 ntBASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 AC097658.1-201ENST00000475555 843 ntBASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 TMEM191A-211ENST00000637163 1067 ntBASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.69■□□□□ 0.74
CLIP3Q96DZ5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP3Q96DZ5 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms