Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.42■□□□□ 0.54
CPNE4Q96A23 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CPNE4Q96A23 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 AC010980.2-201ENST00000587099 1412 ntBASIC18.41■□□□□ 0.54
CPNE4Q96A23 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 AC093787.1-201ENST00000450396 207 ntBASIC18.41■□□□□ 0.54
CPNE4Q96A23 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.41■□□□□ 0.54
CPNE4Q96A23 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CPNE4Q96A23 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 MCRIP2P1-201ENST00000394346 511 ntBASIC18.4■□□□□ 0.54
CPNE4Q96A23 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 AC121338.2-201ENST00000622535 1744 ntBASIC18.4■□□□□ 0.54
CPNE4Q96A23 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CPNE4Q96A23 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.4■□□□□ 0.54
CPNE4Q96A23 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CPNE4Q96A23 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.39■□□□□ 0.54
CPNE4Q96A23 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.39■□□□□ 0.53
CPNE4Q96A23 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.39■□□□□ 0.53
CPNE4Q96A23 PGM5P4-201ENST00000421970 445 ntBASIC18.39■□□□□ 0.53
CPNE4Q96A23 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.39■□□□□ 0.53
CPNE4Q96A23 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CPNE4Q96A23 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPNE4Q96A23 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CPNE4Q96A23 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPNE4Q96A23 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.39■□□□□ 0.53
CPNE4Q96A23 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPNE4Q96A23 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CPNE4Q96A23 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.39■□□□□ 0.53
CPNE4Q96A23 AF106564.1-201ENST00000607058 2553 ntBASIC18.38■□□□□ 0.53
CPNE4Q96A23 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 GUSBP6-202ENST00000438529 1198 ntBASIC18.38■□□□□ 0.53
CPNE4Q96A23 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.38■□□□□ 0.53
CPNE4Q96A23 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.38■□□□□ 0.53
CPNE4Q96A23 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.38■□□□□ 0.53
CPNE4Q96A23 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.38■□□□□ 0.53
CPNE4Q96A23 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CPNE4Q96A23 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.38■□□□□ 0.53
CPNE4Q96A23 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CPNE4Q96A23 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 CYP21A1P-202ENST00000354927 1481 ntBASIC18.37■□□□□ 0.53
CPNE4Q96A23 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CPNE4Q96A23 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CPNE4Q96A23 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE4Q96A23 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CPNE4Q96A23 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms