Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 AC105020.6-201ENST00000621523 1217 ntBASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 HLA-B-256ENST00000639848 1089 ntBASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDDC3Q8N4P3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 AL359736.2-201ENST00000621992 437 ntBASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 AC079834.2-201ENST00000609776 1949 ntBASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDDC3Q8N4P3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDDC3Q8N4P3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 AC244015.2-201ENST00000616358 1861 ntBASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
HDDC3Q8N4P3 AC092368.3-202ENST00000574180 1591 ntBASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 PNMA6B-201ENST00000538162 1200 ntBASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDDC3Q8N4P3 EP400NL-214ENST00000641289 2402 ntBASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 FBXW4P1-201ENST00000426721 2239 ntBASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.58■□□□□ 0.89
HDDC3Q8N4P3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms