Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
DEPDC4Q8N2C3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19■□□□□ 0.63
DEPDC4Q8N2C3 AP006587.3-201ENST00000525742 1516 ntBASIC19■□□□□ 0.63
DEPDC4Q8N2C3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 AC012414.1-201ENST00000556676 535 ntBASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
DEPDC4Q8N2C3 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 PCDHAC2-203ENST00000615316 3011 ntBASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 YBX1P1-201ENST00000445822 960 ntBASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.98■□□□□ 0.63
DEPDC4Q8N2C3 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 AC105233.4-201ENST00000642045 216 ntBASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.97■□□□□ 0.63
DEPDC4Q8N2C3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
DEPDC4Q8N2C3 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms