Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC116Q8IYX3 LINC01006-201ENST00000333319 2292 ntBASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 AC022517.1-201ENST00000592429 346 ntBASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 AC027702.1-201ENST00000563810 1770 ntBASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CCDC116Q8IYX3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 AC007322.3-201ENST00000426526 701 ntBASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 AC006015.1-201ENST00000429970 570 ntBASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC116Q8IYX3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 MFSD11-216ENST00000590393 1141 ntBASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 AC011767.1-201ENST00000617410 1153 ntBASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 AC073314.1-201ENST00000568729 2216 ntBASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 AC092667.1-201ENST00000434301 2586 ntBASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC116Q8IYX3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 CDV3P1-201ENST00000471403 739 ntBASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
CCDC116Q8IYX3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCDC116Q8IYX3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms