Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
TRIM40Q6P9F5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 CDV3P1-201ENST00000471403 739 ntBASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRIM40Q6P9F5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM40Q6P9F5 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM40Q6P9F5 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM40Q6P9F5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM40Q6P9F5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM40Q6P9F5 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 AC007322.3-201ENST00000426526 701 ntBASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 AC007322.4-201ENST00000509611 723 ntBASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 DUX4L16-201ENST00000555130 1264 ntBASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 AC092437.1-201ENST00000624794 1048 ntBASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 AC006128.1-201ENST00000624704 1661 ntBASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 PLK5-205ENST00000642079 1969 ntBASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM40Q6P9F5 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 AC004911.1-201ENST00000416316 871 ntBASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 AL591742.1-201ENST00000604433 565 ntBASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 AC231657.2-201ENST00000624556 255 ntBASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM40Q6P9F5 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms