Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.36■□□□□ 0.53
H3F3AP84243 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.36■□□□□ 0.53
H3F3AP84243 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 AC069236.1-201ENST00000604339 616 ntBASIC18.36■□□□□ 0.53
H3F3AP84243 AL050303.2-201ENST00000619798 666 ntBASIC18.36■□□□□ 0.53
H3F3AP84243 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
H3F3AP84243 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.35■□□□□ 0.53
H3F3AP84243 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
H3F3AP84243 AL512625.2-201ENST00000417533 625 ntBASIC18.35■□□□□ 0.53
H3F3AP84243 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.35■□□□□ 0.53
H3F3AP84243 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
H3F3AP84243 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.34■□□□□ 0.53
H3F3AP84243 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.34■□□□□ 0.53
H3F3AP84243 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
H3F3AP84243 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
H3F3AP84243 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.33■□□□□ 0.53
H3F3AP84243 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.33■□□□□ 0.53
H3F3AP84243 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.33■□□□□ 0.53
H3F3AP84243 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
H3F3AP84243 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 MIR663A-201ENST00000385250 93 ntBASIC18.33■□□□□ 0.52
H3F3AP84243 AC008694.1-202ENST00000636953 945 ntBASIC18.33■□□□□ 0.52
H3F3AP84243 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.33■□□□□ 0.52
H3F3AP84243 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
H3F3AP84243 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.32■□□□□ 0.52
H3F3AP84243 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.32■□□□□ 0.52
H3F3AP84243 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.32■□□□□ 0.52
H3F3AP84243 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.32■□□□□ 0.52
H3F3AP84243 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.32■□□□□ 0.52
H3F3AP84243 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 CYP21A1P-202ENST00000354927 1481 ntBASIC18.32■□□□□ 0.52
H3F3AP84243 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 AC007225.1-201ENST00000566331 1836 ntBASIC18.31■□□□□ 0.52
H3F3AP84243 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 AC090192.1-201ENST00000517740 490 ntBASIC18.31■□□□□ 0.52
H3F3AP84243 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 MIR2861-201ENST00000636310 90 ntBASIC18.31■□□□□ 0.52
H3F3AP84243 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms