Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.36■□□□□ 0.53
H3F3AP84243 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.36■□□□□ 0.53
H3F3AP84243 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 AC069236.1-201ENST00000604339 616 ntBASIC18.36■□□□□ 0.53
H3F3AP84243 AL050303.2-201ENST00000619798 666 ntBASIC18.36■□□□□ 0.53
H3F3AP84243 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
H3F3AP84243 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.36■□□□□ 0.53
H3F3AP84243 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
H3F3AP84243 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.35■□□□□ 0.53
H3F3AP84243 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
H3F3AP84243 AL512625.2-201ENST00000417533 625 ntBASIC18.35■□□□□ 0.53
H3F3AP84243 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.35■□□□□ 0.53
H3F3AP84243 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.35■□□□□ 0.53
H3F3AP84243 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
H3F3AP84243 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
H3F3AP84243 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.34■□□□□ 0.53
H3F3AP84243 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
H3F3AP84243 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.34■□□□□ 0.53
H3F3AP84243 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.34■□□□□ 0.53
H3F3AP84243 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
H3F3AP84243 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
H3F3AP84243 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.33■□□□□ 0.53
H3F3AP84243 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.33■□□□□ 0.53
H3F3AP84243 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.33■□□□□ 0.53
H3F3AP84243 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
H3F3AP84243 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 MIR663A-201ENST00000385250 93 ntBASIC18.33■□□□□ 0.52
H3F3AP84243 AC008694.1-202ENST00000636953 945 ntBASIC18.33■□□□□ 0.52
H3F3AP84243 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.33■□□□□ 0.52
H3F3AP84243 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
H3F3AP84243 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
H3F3AP84243 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.32■□□□□ 0.52
H3F3AP84243 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.32■□□□□ 0.52
H3F3AP84243 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.32■□□□□ 0.52
H3F3AP84243 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.32■□□□□ 0.52
H3F3AP84243 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.32■□□□□ 0.52
H3F3AP84243 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 CYP21A1P-202ENST00000354927 1481 ntBASIC18.32■□□□□ 0.52
H3F3AP84243 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
H3F3AP84243 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 AC007225.1-201ENST00000566331 1836 ntBASIC18.31■□□□□ 0.52
H3F3AP84243 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 AC090192.1-201ENST00000517740 490 ntBASIC18.31■□□□□ 0.52
H3F3AP84243 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.31■□□□□ 0.52
H3F3AP84243 MIR2861-201ENST00000636310 90 ntBASIC18.31■□□□□ 0.52
H3F3AP84243 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
H3F3AP84243 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
H3F3AP84243 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms