Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CLRN1P58418 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.31■□□□□ 0.52
CLRN1P58418 AC243732.1-201ENST00000612648 864 ntBASIC18.31■□□□□ 0.52
CLRN1P58418 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLRN1P58418 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.31■□□□□ 0.52
CLRN1P58418 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLRN1P58418 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLRN1P58418 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CLRN1P58418 FP700111.2-201ENST00000619190 1892 ntBASIC18.31■□□□□ 0.52
CLRN1P58418 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.3■□□□□ 0.52
CLRN1P58418 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CLRN1P58418 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CLRN1P58418 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.3■□□□□ 0.52
CLRN1P58418 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.3■□□□□ 0.52
CLRN1P58418 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.3■□□□□ 0.52
CLRN1P58418 AC016769.1-201ENST00000409132 1010 ntBASIC18.3■□□□□ 0.52
CLRN1P58418 KRT18P11-201ENST00000435214 1283 ntBASIC18.3■□□□□ 0.52
CLRN1P58418 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.3■□□□□ 0.52
CLRN1P58418 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CLRN1P58418 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.3■□□□□ 0.52
CLRN1P58418 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.3■□□□□ 0.52
CLRN1P58418 AC007225.1-201ENST00000566331 1836 ntBASIC18.3■□□□□ 0.52
CLRN1P58418 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLRN1P58418 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.29■□□□□ 0.52
CLRN1P58418 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CLRN1P58418 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.29■□□□□ 0.52
CLRN1P58418 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CLRN1P58418 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.29■□□□□ 0.52
CLRN1P58418 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.29■□□□□ 0.52
CLRN1P58418 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.29■□□□□ 0.52
CLRN1P58418 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CLRN1P58418 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLRN1P58418 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CLRN1P58418 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.29■□□□□ 0.52
CLRN1P58418 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLRN1P58418 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CLRN1P58418 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLRN1P58418 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLRN1P58418 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.28■□□□□ 0.52
CLRN1P58418 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.28■□□□□ 0.52
CLRN1P58418 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLRN1P58418 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.28■□□□□ 0.52
CLRN1P58418 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.28■□□□□ 0.52
CLRN1P58418 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CLRN1P58418 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLRN1P58418 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.28■□□□□ 0.52
CLRN1P58418 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLRN1P58418 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CLRN1P58418 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 AL157384.1-201ENST00000445995 2473 ntBASIC18.27■□□□□ 0.52
CLRN1P58418 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.27■□□□□ 0.52
CLRN1P58418 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.27■□□□□ 0.52
CLRN1P58418 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CLRN1P58418 AC091799.1-201ENST00000422823 811 ntBASIC18.27■□□□□ 0.52
CLRN1P58418 AC007322.3-201ENST00000426526 701 ntBASIC18.27■□□□□ 0.52
CLRN1P58418 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.27■□□□□ 0.52
CLRN1P58418 CDV3P1-201ENST00000471403 739 ntBASIC18.27■□□□□ 0.52
CLRN1P58418 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.27■□□□□ 0.52
CLRN1P58418 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.27■□□□□ 0.52
CLRN1P58418 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CLRN1P58418 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms